Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1895

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1894: 10262 - K01253 EPHX1 microsomal epoxide hydrolase, at 450582 to 452258 10262 mRNA_1895: 10263 - K09247 CYP1, HAP1 heme activator protein 1, at 452374 to 455740 10263 mRNA_1896: 10264 - K00844 HK hexokinase, at 456239 to 458071 10264

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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451,387 + 10262 mRNA_1894 0.48 1.2
451,550 + 10262 mRNA_1894 0.58 1.0
451,556 - 10262 mRNA_1894 0.58 0.7
451,662 + 10262 mRNA_1894 0.64 0.4
451,834 + 10262 mRNA_1894 0.75 0.8
452,384 + 0.2
452,396 - -1.3
452,559 + -0.3
453,103 - 10263 mRNA_1895 0.22 -0.1
453,174 + 10263 mRNA_1895 0.24 1.3
453,401 - 10263 mRNA_1895 0.31 0.5
453,700 + 10263 mRNA_1895 0.39 0.7
453,719 + 10263 mRNA_1895 0.40 0.5
453,849 - 10263 mRNA_1895 0.44 -1.6
453,856 + 10263 mRNA_1895 0.44 0.4
453,867 + 10263 mRNA_1895 0.44 0.5
453,911 + 10263 mRNA_1895 0.46 -0.0
453,925 + 10263 mRNA_1895 0.46 -1.0
454,020 + 10263 mRNA_1895 0.49 -1.5
454,183 + 10263 mRNA_1895 0.54 0.0
454,437 - 10263 mRNA_1895 0.61 0.5
455,094 - 10263 mRNA_1895 0.81 0.4
455,191 - 10263 mRNA_1895 0.84 2.4
455,244 - 10263 mRNA_1895 0.85 0.2
455,321 - 10263 mRNA_1895 0.88 -0.3
455,622 - 0.6
455,627 + 0.5
455,637 + 0.9
455,645 + -0.3
455,656 + -0.4
455,776 - 0.5
455,798 - 1.4
455,824 + 0.5
455,922 - 2.1
455,934 - -2.6
455,950 - -0.0
455,955 + 2.1
455,955 + -0.2
455,957 + 0.1
455,963 + 0.2
455,968 + -0.0
455,968 + 0.5
455,970 - -0.6
456,078 - -0.0
456,098 - 0.7
456,102 - -0.9
456,122 + 1.2
456,226 - 2.2
456,243 + 1.1
456,264 - 3.4
456,393 - 1.5
456,408 - -1.7
456,524 + 10264 mRNA_1896 0.16 1.3
456,533 - 10264 mRNA_1896 0.16 1.2
456,538 - 10264 mRNA_1896 0.16 1.4
456,546 + 10264 mRNA_1896 0.17 0.7
456,549 + 10264 mRNA_1896 0.17 1.8
456,550 + 10264 mRNA_1896 0.17 0.1
456,558 + 10264 mRNA_1896 0.17 1.3
456,564 + 10264 mRNA_1896 0.18 -0.3
456,583 - 10264 mRNA_1896 0.19 0.5