Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1890

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1888: 10256 - HMMPfam-Protein of unknown function (DUF2423)-PF10338, at 441171 to 441971 10256 mRNA_1889: 10257 - Hypothetical Protein, at 442061 to 442321 10257 mRNA_1890: 10258 - Hypothetical Protein, at 442391 to 442819 10258 mRNA_1891: 10259 - K03083 GSK3B glycogen synthase kinase 3 beta, at 443414 to 444929 10259

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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441,395 + 10256 mRNA_1888 0.28 2.0
441,540 - 10256 mRNA_1888 0.46 2.4
441,677 + 10256 mRNA_1888 0.63 1.7
441,942 + -0.1
441,963 + 1.0
441,975 + -0.4
441,976 + -2.0
441,977 + -1.1
441,977 - -1.1
441,992 + -2.1
442,113 + 10257 mRNA_1889 0.20 -0.0
442,127 + 10257 mRNA_1889 0.25 -0.2
442,128 - 10257 mRNA_1889 0.26 0.4
442,129 - 10257 mRNA_1889 0.26 0.5
442,133 + 10257 mRNA_1889 0.28 -0.9
442,152 + 10257 mRNA_1889 0.35 -0.5
442,165 + 10257 mRNA_1889 0.40 -0.7
442,172 - 10257 mRNA_1889 0.43 0.2
442,177 + 10257 mRNA_1889 0.44 -0.8
442,180 - 10257 mRNA_1889 0.46 -0.3
442,183 - 10257 mRNA_1889 0.47 1.1
442,210 + 10257 mRNA_1889 0.57 1.9
442,221 - 10257 mRNA_1889 0.61 0.7
442,222 - 10257 mRNA_1889 0.62 -0.2
442,227 - 10257 mRNA_1889 0.64 0.8
442,230 - 10257 mRNA_1889 0.65 0.6
442,231 - 10257 mRNA_1889 0.65 0.0
442,233 + 10257 mRNA_1889 0.66 -1.0
442,234 + 10257 mRNA_1889 0.66 1.1
442,234 - 10257 mRNA_1889 0.66 0.5
442,234 + 10257 mRNA_1889 0.66 1.6
442,236 - 10257 mRNA_1889 0.67 0.5
442,237 - 10257 mRNA_1889 0.67 -0.7
442,238 - 10257 mRNA_1889 0.68 1.1
442,240 + 10257 mRNA_1889 0.69 0.6
442,240 + 10257 mRNA_1889 0.69 1.3
442,246 + 10257 mRNA_1889 0.71 0.5
442,249 + 10257 mRNA_1889 0.72 -0.7
442,274 - 10257 mRNA_1889 0.82 1.3
442,275 - 10257 mRNA_1889 0.82 2.2
442,276 + 10257 mRNA_1889 0.82 -0.4
442,276 + 10257 mRNA_1889 0.82 1.1
442,277 - 10257 mRNA_1889 0.83 -0.5
442,281 + 10257 mRNA_1889 0.84 -2.1
442,281 - 10257 mRNA_1889 0.84 1.2
442,281 - 10257 mRNA_1889 0.84 0.6
442,290 - 10257 mRNA_1889 0.88 0.1
442,291 - 10257 mRNA_1889 0.88 0.2
442,293 - 10257 mRNA_1889 0.89 0.2
442,293 + 10257 mRNA_1889 0.89 0.0
442,407 - -0.2
442,410 + 0.3
442,427 - 1.8
442,431 - 1.0
442,444 - 10258 mRNA_1890 0.12 -0.6
442,460 - 10258 mRNA_1890 0.16 0.3
442,466 + 10258 mRNA_1890 0.17 0.7
442,553 + 10258 mRNA_1890 0.38 -1.6
442,605 - 10258 mRNA_1890 0.50 0.3
442,623 + 10258 mRNA_1890 0.54 0.5
442,763 + 10258 mRNA_1890 0.87 -3.4
442,919 - -1.3
442,927 + -2.0
442,927 + -4.0
442,946 + -2.0
442,947 + -2.4
443,113 + -1.2
443,225 - -4.1