Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1851

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1850: 10218 - K00311 ETFDH electron-transferring-flavoprotein dehydrogenase, at 368575 to 371026 10218 mRNA_1851: 10219 - BLAST cell wall surface anchor family protein [Moniliop..., at 371748 to 376200 10219 mRNA_1852: 10220 - K06133 LYS5, acpT 4'-phosphopantetheinyl transferase, at 376283 to 377328 10220

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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370,754 - 10218 mRNA_1850 0.89 -2.8
370,768 + 10218 mRNA_1850 0.89 0.1
370,915 - -1.1
370,922 - -2.0
370,923 - -2.5
371,044 - -0.3
371,045 - 0.2
371,052 + 0.8
371,052 - 0.4
371,054 + 0.2
371,060 + -2.5
371,060 - -0.4
371,063 + 0.1
371,072 - 0.4
371,073 + 0.1
371,073 - -0.3
371,076 - 0.2
371,077 + 1.0
371,080 + -0.6
371,084 + -0.1
371,089 - 0.1
371,090 + 0.5
371,097 + -0.4
371,168 - 0.7
371,219 + 0.8
371,239 + 0.8
371,253 + -0.5
371,382 + -1.3
371,382 - 1.1
371,383 - 1.2
371,392 + -1.3
371,392 + -0.5
371,394 - 0.9
371,394 - 0.6
371,518 - -0.4
371,528 + 1.1
371,648 + 1.4
371,804 - 0.3
372,134 - 0.2
372,423 + 10219 mRNA_1851 0.15 -1.5
372,722 + 10219 mRNA_1851 0.22 -0.3
372,993 + 10219 mRNA_1851 0.28 -0.6
373,005 + 10219 mRNA_1851 0.28 -0.2
373,111 - 10219 mRNA_1851 0.31 1.1
373,428 + 10219 mRNA_1851 0.38 0.1
374,097 - 10219 mRNA_1851 0.53 2.0
374,135 - 10219 mRNA_1851 0.54 2.7
374,415 + 10219 mRNA_1851 0.60 1.0
374,416 - 10219 mRNA_1851 0.60 0.9
374,427 - 10219 mRNA_1851 0.60 0.3
374,444 - 10219 mRNA_1851 0.61 0.6
374,610 + 10219 mRNA_1851 0.64 -0.6
375,303 + 10219 mRNA_1851 0.80 -0.3
375,659 + 10219 mRNA_1851 0.88 1.3
376,266 + -0.8