Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1842

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1841: 10209 - KOG4476 Gluconate transport-inducing protein, at 342756 to 344236 10209 mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344816 to 347199 10210 mRNA_1843: 10211 - Hypothetical Protein, at 347522 to 353659 10211

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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344,164 - 1.9
344,262 - -0.5
344,331 - -0.9
344,560 - 1.4
344,567 + -1.4
344,583 - -1.8
344,590 - 2.6
344,610 - -0.7
344,643 - 0.7
344,653 + 1.8
344,691 + 0.1
344,693 - -0.9
344,704 + 0.5
344,704 - -0.1
344,727 + -1.2
344,748 + 0.7
344,863 - 0.6
345,015 + 2.3
345,034 - -0.3
345,303 + 10210 mRNA_1842 0.20 0.9
345,453 - 10210 mRNA_1842 0.27 0.7
345,470 + 10210 mRNA_1842 0.27 2.0
345,757 - 10210 mRNA_1842 0.39 0.8
345,773 + 10210 mRNA_1842 0.40 1.4
345,902 + 10210 mRNA_1842 0.46 0.5
346,184 - 10210 mRNA_1842 0.57 -1.0
346,774 + 10210 mRNA_1842 0.82 1.7
346,782 - 10210 mRNA_1842 0.82 -0.0
346,910 - 10210 mRNA_1842 0.88 -2.0
346,921 + 10210 mRNA_1842 0.88 0.0
346,924 - 10210 mRNA_1842 0.88 0.2
347,075 + 0.1
347,187 - -0.5
347,214 + 1.4
347,335 + 0.9
347,346 - 0.2
347,361 - -1.5
347,363 - -0.4
347,365 + 1.3
347,371 - -0.1
347,401 - -0.6
347,515 + 1.3
347,525 + -1.1
347,529 - -0.3
347,676 - 1.0
347,794 - 1.3
347,806 + -2.1
347,832 + 0.9
347,836 + 0.1
347,949 - -1.8
347,955 + 0.6