Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1841

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1841: 10209 - KOG4476 Gluconate transport-inducing protein, at 342756 to 344236 10209 mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344816 to 347199 10210

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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341,780 - -0.2
341,783 + 0.4
341,788 + 1.0
341,790 - -0.2
341,796 - -0.5
341,824 - -0.6
341,825 - 0.7
341,846 - -0.5
341,847 + 0.0
341,849 - 1.4
341,853 - 1.0
341,857 + -2.2
341,866 + -0.4
341,868 - -1.3
341,869 + -1.7
341,871 + 0.4
341,880 + 0.2
341,889 - 0.8
341,889 + -0.0
341,889 - -0.0
341,892 + -0.5
341,892 + -2.1
341,892 + -0.4
341,904 - 0.1
341,908 - -0.1
341,908 - 0.9
341,908 - -1.1
341,908 + 0.3
341,909 - 2.6
341,909 + 1.9
341,911 + 0.9
341,911 + -0.4
341,916 + -0.3
341,921 - -0.4
341,922 + -1.8
341,924 - -1.9
341,924 + -0.6
341,925 + 0.3
341,928 + 0.6
341,942 - 0.7
341,952 - 0.0
341,969 + 0.1
341,974 + 1.3
341,993 + -1.4
341,994 + -0.5
342,016 - 0.8
342,018 - -0.7
342,025 - 0.9
342,027 + -0.3
342,029 + -0.3
342,034 - 1.5
342,054 - -0.0
342,071 + 0.7
342,076 + -0.8
342,082 + -2.0
342,090 - 0.4
342,097 - 0.7
342,099 + -1.1
342,108 + 0.5
342,122 - 0.1
342,141 - -0.7
342,142 + -0.9
342,155 - -1.9
342,160 + 0.6
342,160 + 0.3
342,175 + -2.7
342,175 + 1.4
342,187 - 0.7
342,222 + 0.8
342,238 + 0.3
342,239 - -0.4
342,240 + -0.5
342,254 + 1.2
342,269 - 0.1
342,370 - -0.2
342,371 - 0.4
342,374 + 1.1
342,376 + -1.7
342,381 + -0.1
342,383 + 1.0
342,386 - -1.5
342,390 - 1.1
342,392 + -0.3
342,394 + -0.8
342,396 - -1.0
342,398 - 1.1
342,400 + 1.2
342,422 + 0.1
342,425 - 1.0
342,437 - 0.1
342,438 - 2.2
342,449 - 0.6
342,450 - -1.0
342,451 - -0.8
342,455 - -1.5
342,458 + 0.8
342,458 + 0.4
342,463 - -0.4
342,467 - 0.4
342,468 + 0.7
342,475 + -0.3
342,482 - -0.9
342,486 - 0.5
342,491 + -0.1
342,493 - 0.5
342,506 + 1.0
342,514 + 0.6
342,519 - -0.4
342,528 + -0.6
342,531 - 2.3
342,531 + 0.2
342,554 + 0.3
342,562 + 0.3
342,566 - -2.4
342,566 + 0.2
342,577 + 0.1
342,577 + 0.4
342,605 - 1.3
342,609 - 0.3
342,621 - 0.3
342,627 - 1.2
342,637 - 0.1
342,702 - 0.9
342,708 - -0.2
342,803 + 0.6
342,808 - 0.6
342,815 - 0.4
342,818 + 0.6
342,824 + -0.6
342,826 + 0.3
342,840 + -0.1
342,861 + -1.3
342,975 + 10209 mRNA_1841 0.15 0.8
343,087 - 10209 mRNA_1841 0.22 -0.6
343,121 + 10209 mRNA_1841 0.25 0.5
343,140 + 10209 mRNA_1841 0.26 1.0
343,284 - 10209 mRNA_1841 0.36 -1.8
343,296 + 10209 mRNA_1841 0.36 -0.0
343,539 + 10209 mRNA_1841 0.53 0.7
343,715 - 10209 mRNA_1841 0.65 2.0
344,164 - 1.9
344,262 - -0.5
344,331 - -0.9
344,560 - 1.4
344,567 + -1.4
344,583 - -1.8
344,590 - 2.6
344,610 - -0.7
344,643 - 0.7
344,653 + 1.8
344,691 + 0.1
344,693 - -0.9
344,704 + 0.5
344,704 - -0.1
344,727 + -1.2
344,748 + 0.7
344,863 - 0.6
345,015 + 2.3
345,034 - -0.3