Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1815

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1815: 10183 - K20777 EXD2 exonuclease 3'-5' domain-containing protein 2, at 280165 to 281761 10183 mRNA_1816: 10184 - K08178 JEN MFS transporter, SHS family, lactate transporter, at 282501 to 284889 10184

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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279,168 + 0.1
279,183 - 0.7
279,395 - -0.7
279,854 - 0.3
280,022 - -0.6
280,172 - -0.1
280,282 - 0.3
280,461 + 10183 mRNA_1815 0.19 0.1
280,504 + 10183 mRNA_1815 0.21 1.8
281,379 + 10183 mRNA_1815 0.76 -0.8
281,495 - 10183 mRNA_1815 0.83 2.2
281,657 - -0.7
281,659 - 0.1
281,661 - 0.6
281,682 + -1.5
281,748 + 0.0
281,762 - 0.0
281,784 - -0.6
281,785 + -0.2
281,803 - 0.0
281,808 - -0.9
281,810 + 0.4
281,826 - -0.6
281,827 + -0.2
281,859 - 1.0
281,896 + 0.9
281,935 + 2.9
281,950 + -0.1
281,978 - -0.2
281,981 + 1.0
282,003 - -0.6
282,004 + 0.3
282,008 - 1.1
282,015 + 1.4
282,019 - -0.8
282,025 + 0.4
282,040 + 0.4
282,076 + 0.9
282,184 + 0.5
282,195 - 2.6
282,209 + 0.8
282,212 + -1.5
282,215 - 1.0
282,240 + 0.3
282,242 - -1.2
282,280 + 1.8
282,282 + 2.6
282,287 + -0.1
282,306 - 0.9
282,310 + -0.2
282,352 - -0.6
282,352 + 0.3
282,355 - -0.5
282,360 + 0.3
282,361 + 0.5
282,361 - -0.1
282,362 - 0.2
282,364 - -0.5
282,364 + 0.1
282,364 - 0.1
282,375 - -0.0
282,381 + -0.5
282,382 + 1.7
282,387 - 1.0
282,395 + 0.2
282,397 + 0.1
282,401 - 0.4
282,418 - 0.5
282,439 - 0.1
282,522 + 0.1
282,532 + 0.4
282,569 + 1.1
282,579 + -0.9
282,678 - -3.4