Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1778

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1777: 10145 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 181688 to 183339 10145 mRNA_1778: 10146 - HMMPfam-Protein of unknown function (DUF3140)-PF11338, at 183899 to 184487 10146 mRNA_1779: 10147 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 185059 to 187419 10147

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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182,967 + 10145 mRNA_1777 0.77 0.1
182,980 + 10145 mRNA_1777 0.78 0.3
182,998 + 10145 mRNA_1777 0.79 0.1
183,072 - 10145 mRNA_1777 0.84 -0.4
183,082 + 10145 mRNA_1777 0.84 0.7
183,119 - 10145 mRNA_1777 0.87 -0.5
183,358 - 0.8
183,389 - -0.3
183,406 + 0.2
183,518 - -0.1
183,576 + 0.3
183,582 + 0.1
183,690 + -1.0
183,690 + 0.2
183,703 + 0.0
183,704 - 1.0
183,807 + -0.5
183,961 + 10146 mRNA_1778 0.11 0.3
183,977 + 10146 mRNA_1778 0.13 0.6
184,417 - 10146 mRNA_1778 0.88 -0.6
184,427 - 10146 mRNA_1778 0.90 0.8
184,433 + 1.9
184,565 + 2.6
184,845 - 2.4
184,853 + -1.7
184,856 - 0.4
184,881 + 0.6
184,882 - 0.2
184,883 + 0.3
184,891 + 1.1
184,894 - 0.7
184,898 - -0.6
184,899 - -1.9
184,933 - 0.9
184,954 + 0.7
185,068 - 0.5
185,079 - 0.5
185,245 + -0.5
185,257 + 0.0
185,259 - 0.6
185,402 + 10147 mRNA_1779 0.15 -0.3
185,452 - 10147 mRNA_1779 0.17 1.3
185,466 + 10147 mRNA_1779 0.17 1.0