Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1775

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1774: 10142 - Hypothetical Protein, at 173181 to 173906 10142 mRNA_1775: 10143 - KOG1289 Amino acid transporters, at 174192 to 176320 10143 mRNA_1776: 10144 - K01869 LARS, leuS leucyl-tRNA synthetase, at 177304 to 181065 10144

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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173,224 + 0.9
173,309 - 10142 mRNA_1774 0.18 0.4
173,366 + 10142 mRNA_1774 0.25 -0.1
173,398 + 10142 mRNA_1774 0.30 0.9
173,504 + 10142 mRNA_1774 0.44 -0.3
173,512 + 10142 mRNA_1774 0.46 -0.2
173,596 + 10142 mRNA_1774 0.57 -0.5
173,634 + 10142 mRNA_1774 0.62 -0.5
173,650 + 10142 mRNA_1774 0.65 -2.1
173,899 - 0.4
173,986 + 2.7
174,073 - 0.2
174,104 - -0.8
174,126 + 1.2
174,238 + 0.4
174,377 + 0.7
174,562 - 10143 mRNA_1775 0.17 1.2
174,565 + 10143 mRNA_1775 0.18 -0.5
175,104 - 10143 mRNA_1775 0.43 -3.4
175,249 - 10143 mRNA_1775 0.50 -1.1
175,290 - 10143 mRNA_1775 0.52 -0.2
175,297 + 10143 mRNA_1775 0.52 0.7
175,464 - 10143 mRNA_1775 0.60 -1.5
175,541 - 10143 mRNA_1775 0.63 -0.0
175,853 - 10143 mRNA_1775 0.78 0.2
175,873 + 10143 mRNA_1775 0.79 0.6
175,963 - 10143 mRNA_1775 0.83 0.1
175,969 + 10143 mRNA_1775 0.83 1.1
176,010 - 10143 mRNA_1775 0.85 -0.2
176,089 - 10143 mRNA_1775 0.89 0.1
176,151 + -0.2
176,265 + 0.1
176,295 - 0.4
176,309 - 0.5
176,401 - -0.1
176,432 + -0.0
176,432 - 2.4
176,441 - 0.5
176,442 + -0.5
176,459 + -2.6
176,471 - -0.8
176,473 - -0.6
176,499 + -1.6
176,515 + 1.3
176,516 + -0.6
176,517 - -1.1
176,527 + -0.3
176,572 + 0.7
176,575 - 0.3
176,680 + -0.6
176,723 - 0.7
176,749 - 0.8
176,889 + 0.8
177,019 - 0.9
177,025 - -0.1
177,038 + 1.1
177,050 + -0.9
177,064 - -1.0
177,200 - -0.5
177,201 + 1.7