Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1769

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1768: 10136 - K01858 INO1, ISYNA1 myo-inositol-1-phosphate synthase, at 156346 to 158351 10136 mRNA_1769: 10137 - Interpro F-box-like 0, at 159108 to 161176 10137 mRNA_1770: 10138 - HMMPfam-F-box-like-PF12937, at 161532 to 163380 10138

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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158,117 + 10136 mRNA_1768 0.88 1.7
158,121 - 10136 mRNA_1768 0.88 1.0
158,230 - -0.2
158,550 + 0.3
158,554 + 0.1
158,571 + -0.6
158,585 + 0.7
158,671 + -1.9
158,704 - 0.4
158,711 - 3.4
158,724 - 1.0
158,736 - -1.0
158,738 + -0.4
158,741 + 0.0
158,758 + 0.6
158,834 - 1.5
158,845 - 0.4
158,856 + 0.2
158,859 - -1.1
158,867 - 0.0
158,867 + 0.0
158,875 + -0.6
158,879 - 0.4
158,879 + 1.4
158,900 + -0.0
158,901 - 1.4
158,914 + -0.8
158,915 - -2.2
158,976 - 0.1
158,981 + 1.6
158,982 - -0.5
158,987 + 1.3
158,988 - 0.9
158,992 - 0.9
158,995 + 0.8
158,999 + 1.2
159,001 - 0.4
159,010 - 1.6
159,011 + 0.1
159,017 + 0.1
159,022 + 1.8
159,036 + -4.9
159,036 + 0.3
159,042 + -1.2
159,055 + -0.5
159,183 - -2.4
159,225 + -0.1
159,329 - 10137 mRNA_1769 0.11 0.6
159,339 - 10137 mRNA_1769 0.11 0.2
159,348 + 10137 mRNA_1769 0.12 1.7
159,449 - 10137 mRNA_1769 0.16 0.3
159,456 + 10137 mRNA_1769 0.17 0.9
159,509 - 10137 mRNA_1769 0.19 0.3
159,511 + 10137 mRNA_1769 0.19 0.5
159,516 - 10137 mRNA_1769 0.20 1.2
159,528 + 10137 mRNA_1769 0.20 1.2
159,544 + 10137 mRNA_1769 0.21 1.3
159,572 + 10137 mRNA_1769 0.22 -2.0
159,589 - 10137 mRNA_1769 0.23 0.6
159,630 - 10137 mRNA_1769 0.25 1.1
159,646 + 10137 mRNA_1769 0.26 0.6
159,660 - 10137 mRNA_1769 0.27 -0.4
159,660 - 10137 mRNA_1769 0.27 -0.1
159,715 - 10137 mRNA_1769 0.29 -0.1
159,720 + 10137 mRNA_1769 0.30 0.0
159,735 - 10137 mRNA_1769 0.30 0.8
159,754 + 10137 mRNA_1769 0.31 0.4
159,927 + 10137 mRNA_1769 0.40 0.7
159,927 + 10137 mRNA_1769 0.40 0.2
160,143 + 10137 mRNA_1769 0.50 0.9
160,204 + 10137 mRNA_1769 0.53 -2.4
160,209 + 10137 mRNA_1769 0.53 -0.4
160,219 + 10137 mRNA_1769 0.54 -0.2
160,222 - 10137 mRNA_1769 0.54 0.4
160,548 - 10137 mRNA_1769 0.70 -0.5
160,594 - 10137 mRNA_1769 0.72 -1.2
160,813 - 10137 mRNA_1769 0.82 1.1
160,821 + 10137 mRNA_1769 0.83 0.3
161,141 - 0.3