Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1762

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1761: 10129 - K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E, at 141827 to 142144 10129 mRNA_1762: 10130 - Hypothetical Protein, at 142717 to 145078 10130 mRNA_1763: 10131 - Hypothetical Protein, at 145443 to 147690 10131

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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141,936 + 10129 mRNA_1761 0.34 -0.4
141,959 + 10129 mRNA_1761 0.42 -0.1
141,993 + 10129 mRNA_1761 0.52 0.1
142,241 + -0.1
142,509 - 3.2
142,567 - 1.3
142,586 - 0.2
142,594 - 0.7
142,622 + -3.6
142,630 - -0.0
142,641 - 0.5
142,649 - -0.1
142,661 + -0.1
142,673 + -0.4
142,693 - 1.1
142,772 - -1.2
142,918 + -0.3
142,966 - 10130 mRNA_1762 0.11 -0.4
142,980 + 10130 mRNA_1762 0.11 -0.3
143,475 - 10130 mRNA_1762 0.32 0.2
143,528 - 10130 mRNA_1762 0.34 -2.3
144,029 + 10130 mRNA_1762 0.56 -1.7
144,383 + 10130 mRNA_1762 0.71 1.3
144,970 + 0.7
144,970 - 0.3
144,986 + -0.5
145,064 + -1.7
145,137 - 0.5
145,218 + -0.1
145,276 - -1.5
145,286 + 2.0
145,310 - 0.9
145,455 - -0.3
145,955 + 10131 mRNA_1763 0.23 -2.8
145,976 + 10131 mRNA_1763 0.24 0.5