Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1748

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1747: 10115 - Hypothetical Protein, at 106989 to 107598 10115 mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108076 to 110507 10116 mRNA_1749: 10117 - Hypothetical Protein, at 111051 to 112240 10117

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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107,368 - 10115 mRNA_1747 0.62 0.9
107,437 - 10115 mRNA_1747 0.73 -1.1
107,453 + 10115 mRNA_1747 0.76 1.3
107,563 - 0.9
107,584 + -1.5
107,730 - 0.3
107,757 - 1.0
107,781 - -0.7
107,819 + -0.1
108,057 - 0.5
108,058 + -0.0
108,398 + 10116 mRNA_1748 0.13 -1.1
108,807 + 10116 mRNA_1748 0.30 0.0
108,983 + 10116 mRNA_1748 0.37 -0.1
109,077 - 10116 mRNA_1748 0.41 -0.1
109,351 + 10116 mRNA_1748 0.52 0.0
109,812 + 10116 mRNA_1748 0.71 -0.7
109,849 + 10116 mRNA_1748 0.73 0.6
109,968 + 10116 mRNA_1748 0.78 1.1
110,213 - 10116 mRNA_1748 0.88 -1.1
110,232 + 10116 mRNA_1748 0.89 -0.2
110,385 - -1.5
110,540 - -2.4
110,567 + -0.6
110,689 - 1.1
110,716 - 1.6
110,724 - -0.5
110,724 + 0.1
110,731 + -0.6
110,761 - -2.4
110,778 + -0.3
110,843 + -2.4
110,861 - 0.6
110,878 + -0.4
110,928 + -2.7
110,947 - -1.8
111,000 + 0.3
111,027 - 0.2
111,038 - 1.7
111,197 + 10117 mRNA_1749 0.12 0.5