Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1729

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1728: 10096 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 55696 to 58007 10096 mRNA_1729: 10097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 58480 to 59986 10097 mRNA_1730: 10098 - KOG4708 Mitochondrial ribosomal protein MRP17, at 60318 to 61237 10098

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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57,702 - 10096 mRNA_1728 0.87 1.4
57,979 - -0.2
58,434 + 1.1
58,702 + 10097 mRNA_1729 0.15 -0.0
59,158 + 10097 mRNA_1729 0.45 -1.1
59,167 - 10097 mRNA_1729 0.46 0.4
59,173 + 10097 mRNA_1729 0.46 -0.3
59,207 - 10097 mRNA_1729 0.48 1.0
59,274 - 10097 mRNA_1729 0.53 1.2
59,288 - 10097 mRNA_1729 0.54 -0.1
59,291 + 10097 mRNA_1729 0.54 -1.0
59,298 + 10097 mRNA_1729 0.54 1.1
59,324 - 10097 mRNA_1729 0.56 -0.3
59,324 - 10097 mRNA_1729 0.56 0.5
59,369 + 10097 mRNA_1729 0.59 -0.3
59,375 + 10097 mRNA_1729 0.59 -0.1
59,389 - 10097 mRNA_1729 0.60 1.3
59,391 + 10097 mRNA_1729 0.60 -2.8
59,407 - 10097 mRNA_1729 0.62 0.0
59,535 - 10097 mRNA_1729 0.70 -1.3
59,536 + 10097 mRNA_1729 0.70 1.3
59,566 + 10097 mRNA_1729 0.72 -0.8
59,570 + 10097 mRNA_1729 0.72 0.3
59,720 - 10097 mRNA_1729 0.82 -0.1
59,740 + 10097 mRNA_1729 0.84 -0.6
59,740 + 10097 mRNA_1729 0.84 1.4
59,741 + 10097 mRNA_1729 0.84 1.4
59,749 - 10097 mRNA_1729 0.84 3.0
59,755 + 10097 mRNA_1729 0.85 3.1
59,791 + 10097 mRNA_1729 0.87 -2.0
59,877 + 0.9
59,896 - 1.9
59,908 - -0.9
60,020 - 0.4
60,036 - -0.4
60,036 - 0.4
60,040 + 1.0
60,047 - -0.6
60,048 + -1.0
60,061 - 1.3
60,062 + 0.9
60,065 - 1.2
60,068 + 1.4
60,069 + 0.8
60,070 + -0.5
60,083 + 0.1
60,086 - -0.0
60,089 + -0.1
60,089 - -0.5
60,090 + 1.1
60,143 + -0.7
60,163 - 0.8
60,173 + 1.3
60,271 - 1.0