Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1723

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1723: 10091 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 38655 to 42471 10091 mRNA_1724: 10092 - K08827 PRPF4B serine/threonine-protein kinase PRP4, at 43091 to 44788 10092

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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37,660 + 0.2
37,703 - -0.3
37,717 - -1.1
37,735 - -0.5
37,831 - 0.6
37,837 + -0.6
37,921 - -2.6
37,933 - -1.1
37,934 + -0.2
37,934 + -2.4
37,938 + -1.3
37,950 - 0.2
37,951 + -0.4
37,984 - 0.2
38,063 + 0.5
38,063 - -0.0
38,074 - -0.3
38,075 - -0.8
38,083 + -1.8
38,091 - -0.2
38,140 - 0.3
38,248 - 0.2
38,249 - -0.6
38,366 + 0.6
38,384 + -0.1
38,409 + -0.3
38,409 + -0.7
38,929 - -1.0
38,939 + -1.0
38,940 - 1.2
38,963 + 0.4
39,081 + 10091 mRNA_1723 0.11 -0.7
39,111 + 10091 mRNA_1723 0.12 -0.8
39,362 - 10091 mRNA_1723 0.19 -2.4
39,532 + 10091 mRNA_1723 0.23 0.5
39,581 + 10091 mRNA_1723 0.24 0.2
39,873 + 10091 mRNA_1723 0.32 1.0
40,035 - 10091 mRNA_1723 0.36 1.3
40,066 - 10091 mRNA_1723 0.37 0.9
40,393 + 10091 mRNA_1723 0.46 -0.7
40,399 + 10091 mRNA_1723 0.46 1.3
40,404 - 10091 mRNA_1723 0.46 0.4
40,421 + 10091 mRNA_1723 0.46 0.2
40,498 - 10091 mRNA_1723 0.48 0.1
40,691 + 10091 mRNA_1723 0.53 0.6
41,019 - 10091 mRNA_1723 0.62 -0.1
41,144 - 10091 mRNA_1723 0.65 0.8
41,221 - 10091 mRNA_1723 0.67 0.2
41,286 + 10091 mRNA_1723 0.69 0.3
41,447 + 10091 mRNA_1723 0.73 0.8
41,552 + 10091 mRNA_1723 0.76 -2.1
41,624 + 10091 mRNA_1723 0.78 2.4
41,733 - 10091 mRNA_1723 0.81 0.7
41,872 + 10091 mRNA_1723 0.84 1.3
41,929 + 10091 mRNA_1723 0.86 -1.2
41,957 - 10091 mRNA_1723 0.87 0.7
41,973 + 10091 mRNA_1723 0.87 -0.2
42,146 + 0.2
42,171 + 0.6
42,198 + 1.5
42,285 - 0.2
42,287 - -0.4
42,298 + 0.7
42,311 + -0.3
42,354 - 0.0
42,357 - -0.7
42,445 - 1.4
42,592 - 1.0
42,597 + 1.3
42,614 - 2.2
42,623 + 0.8
42,627 - -0.2
42,632 + 1.3
42,637 - 0.1
42,637 - -0.1
42,638 + -0.1
42,644 + -0.2
42,650 + -0.2
42,652 - -0.5
42,660 + -0.8
42,677 - -1.6
42,684 - 0.6
42,714 - -1.3
42,717 + -1.6
42,729 + -0.2
42,737 - 1.0
42,769 - 0.8
42,778 - 0.9
42,782 + 0.0
42,788 + -0.5
42,808 - 1.6
42,824 - -0.4
42,825 + 0.5
42,825 - -0.4
42,826 - -1.0
42,829 + 1.2
42,832 + 0.6
42,839 + 0.9
42,845 - -1.6
42,846 - 1.4
42,847 - 0.8
42,847 - -1.1
42,868 + 2.0
42,874 + -1.3
42,901 + 0.9
42,912 - 0.4
42,923 - -1.3
42,925 - 0.3
42,999 - 1.4
43,027 - -1.3
43,050 + 1.2