Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1717

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1716: 10084 - K14799 TSR1 pre-rRNA-processing protein TSR1, at 21403 to 24344 10084 mRNA_1717: 10085 - HMMPfam-Per1-like-PF04080, at 24723 to 26291 10085 mRNA_1718: 10086 - HMMPfam-Cytochrome C oxidase copper chaperone (COX17)-PF05051,SUPERFAMILY--SSF47072, at 26598 to 27052 10086

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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24,468 + 1.9
24,469 - 1.1
24,578 - -1.6
24,582 - 1.9
24,586 - 0.1
24,589 + -0.1
24,592 - -0.6
24,592 - 0.4
24,592 - -0.5
24,592 - 0.1
24,602 + -0.8
24,634 + 0.7
24,662 + 0.1
24,811 + -1.3
25,015 - 10085 mRNA_1717 0.19 -1.6
25,028 - 10085 mRNA_1717 0.19 -2.5
25,080 + 10085 mRNA_1717 0.23 -1.6
25,083 - 10085 mRNA_1717 0.23 -2.5
25,091 - 10085 mRNA_1717 0.23 -3.1
25,235 + 10085 mRNA_1717 0.33 -2.8
25,318 - 10085 mRNA_1717 0.38 -1.7
25,323 - 10085 mRNA_1717 0.38 -1.6
25,324 - 10085 mRNA_1717 0.38 -2.9
25,339 - 10085 mRNA_1717 0.39 0.6
25,674 - 10085 mRNA_1717 0.61 -1.7
25,964 + 10085 mRNA_1717 0.79 -2.6
26,071 + 10085 mRNA_1717 0.86 -2.4
26,135 + -2.2
26,229 + -3.1
26,263 - -1.7
26,363 + -0.5
26,377 + 0.9
26,383 - 0.3
26,390 + -1.1
26,413 + -0.1
26,493 - -0.7
26,509 - 1.7
26,511 - -1.3
26,520 + 0.0
27,099 + 0.5
27,101 - 0.4
27,102 + 0.2
27,105 - 1.3
27,136 + 1.9
27,226 - 0.4