Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1188 to 2835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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26 + 1.3
27 + 0.4
28 + 0.2
31 + 0.9
31 + 0.5
41 + -0.3
66 + 0.8
72 - 0.3
72 - 1.2
93 + 1.0
104 + -0.1
105 + 0.6
108 + 0.7
120 - -0.7
128 + 0.4
135 - -1.9
136 + -0.2
136 - -1.1
137 - 1.4
137 - 0.6
138 + 0.8
139 + -0.1
141 - -0.5
150 - 0.6
151 - 0.4
155 + 0.4
155 + -0.1
156 + 0.4
158 + 0.2
173 - 0.3
175 + 0.5
180 - -0.7
215 + 0.5
220 - -1.2
234 + 0.1
254 - 0.9
283 + 1.0
304 + 0.2
322 + 2.3
324 + 1.3
427 + 0.5
453 + 10074 mRNA_1706 0.13 1.3
465 - 10074 mRNA_1706 0.14 1.5
482 + 10074 mRNA_1706 0.16 0.2
493 - 10074 mRNA_1706 0.18 1.1
647 + 10074 mRNA_1706 0.36 0.6
683 - 10074 mRNA_1706 0.40 1.6
809 + 10074 mRNA_1706 0.55 2.7
842 - 10074 mRNA_1706 0.59 0.9
844 + 10074 mRNA_1706 0.59 -0.6
848 - 10074 mRNA_1706 0.59 2.0
902 + 10074 mRNA_1706 0.66 1.7
949 - 10074 mRNA_1706 0.71 -0.2
949 - 10074 mRNA_1706 0.71 -1.2
950 + 10074 mRNA_1706 0.71 -0.1
974 - 10074 mRNA_1706 0.74 0.2
1,016 + 10074 mRNA_1706 0.79 0.5
1,065 + 10074 mRNA_1706 0.85 -1.6
1,118 + 1.9
1,142 + 1.8
1,155 + 1.2
1,272 - 0.8
1,281 + -0.2
1,573 + 10075 mRNA_1707 0.23 1.8
1,625 + 10075 mRNA_1707 0.27 -0.1
1,625 + 10075 mRNA_1707 0.27 2.0
1,628 + 10075 mRNA_1707 0.27 0.5
1,646 + 10075 mRNA_1707 0.28 1.8
1,649 - 10075 mRNA_1707 0.28 0.5
1,680 + 10075 mRNA_1707 0.30 0.4
1,781 + 10075 mRNA_1707 0.36 1.2
1,926 + 10075 mRNA_1707 0.45 0.5
1,996 + 10075 mRNA_1707 0.49 0.5
2,005 - 10075 mRNA_1707 0.50 0.6
2,010 - 10075 mRNA_1707 0.50 0.8
2,033 + 10075 mRNA_1707 0.51 1.2
2,068 + 10075 mRNA_1707 0.53 2.0
2,076 + 10075 mRNA_1707 0.54 -2.0