Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1660

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1659: 10027 - K08741 MSH5 DNA mismatch repair protein MSH5, at 828859 to 833266 10027 mRNA_1660: 10028 - Hypothetical Protein, at 833434 to 834294 10028 mRNA_1661: 10029 - K13979 yahK uncharacterized zinc-type alcohol dehydrogenase-like protein, at 834385 to 835559 10029

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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832,455 - 10027 mRNA_1659 0.82 0.3
832,595 + 10027 mRNA_1659 0.85 0.4
832,635 - 10027 mRNA_1659 0.86 -1.7
832,738 - 10027 mRNA_1659 0.88 -0.3
832,785 + 10027 mRNA_1659 0.89 0.1
832,895 - -0.8
833,026 + -0.4
833,027 - -0.4
833,066 - 0.3
833,193 - -2.1
833,328 - 0.6
833,332 - 0.2
833,345 - 0.3
833,370 + -0.0
833,471 + -0.3
833,506 + 0.0
833,523 - 10028 mRNA_1660 0.10 0.4
833,659 + 10028 mRNA_1660 0.26 1.7
833,805 + 10028 mRNA_1660 0.43 0.7
833,930 + 10028 mRNA_1660 0.58 0.1
833,931 - 10028 mRNA_1660 0.58 0.0
834,479 - -0.4
834,543 - 10029 mRNA_1661 0.13 -0.4
834,553 + 10029 mRNA_1661 0.14 -1.0
834,634 + 10029 mRNA_1661 0.21 0.3
834,974 - 10029 mRNA_1661 0.50 -0.3
835,255 + 10029 mRNA_1661 0.74 -1.0