Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1649

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1648: 10016 - K11436 PRMT3 type I protein arginine methyltransferase, at 802282 to 804374 10016 mRNA_1649: 10017 - KOG2495 NADH-dehydrogenase (ubiquinone), at 804506 to 806689 10017 mRNA_1650: 10018 - KOG0254 Predicted transporter (major facilitator superfamily), at 807576 to 811155 10018

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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804,389 - 1.4
804,517 - 1.3
804,798 + 10017 mRNA_1649 0.13 0.5
804,861 - 10017 mRNA_1649 0.16 0.8
805,017 - 10017 mRNA_1649 0.23 0.3
805,601 + 10017 mRNA_1649 0.50 0.7
805,711 - 10017 mRNA_1649 0.55 1.6
805,825 - 10017 mRNA_1649 0.60 0.0
805,838 + 10017 mRNA_1649 0.61 0.7
806,458 + 10017 mRNA_1649 0.89 0.7
806,742 - -0.6
806,759 - -1.3
806,760 + 0.3
806,761 - 0.6
806,770 + -0.6
806,801 + -0.5
806,803 - 0.5
806,819 + -0.1
806,896 + -0.5
806,914 + 0.9
806,926 + -0.4
806,992 - -0.3
807,022 + 0.0
807,087 + -1.4
807,097 + -0.3
807,099 + -0.2
807,123 - -0.6
807,126 - -0.3
807,132 + -0.1
807,141 + -0.0
807,181 - 1.0
807,185 + 1.3
807,190 - 0.1
807,192 - -1.3
807,194 - 1.2
807,200 - 0.6
807,201 + -1.9
807,210 + 0.3
807,214 - -0.6
807,258 - -0.5
807,261 + 2.1
807,264 - -1.7
807,280 - 0.5
807,285 + -0.1
807,294 - -0.6
807,313 + -0.0
807,417 - 0.0
807,434 - 1.5
807,438 + 0.4
807,483 + -1.7
807,483 + -1.5
807,508 - 0.1
807,511 + 0.5
807,517 - 0.6
807,534 - -0.3