Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1634

Experiments: YNB Ricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762446 to 764135 10001 mRNA_1634: 10002 - HMMPfam-alpha/beta hydrolase fold-PF07859,ProSitePatterns-Lipolytic enzymes "G-D-X-G" family, putative serine active site.-PS01174,SUPERFAMILY--SSF53474, at 764315 to 766210 10002

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Ricinoleic Acid
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763,319 - 10001 mRNA_1633 0.52 0.8
763,686 - 10001 mRNA_1633 0.73 -1.9
763,697 - 10001 mRNA_1633 0.74 -0.2
764,029 + 1.0
764,245 - -0.3
764,261 + 1.0
764,263 - -1.4
764,263 - 0.6
764,269 - 0.2
764,430 - 1.0
764,821 - 10002 mRNA_1634 0.27 0.5
765,148 - 10002 mRNA_1634 0.44 0.3
765,427 - 10002 mRNA_1634 0.59 -1.2
765,517 - 10002 mRNA_1634 0.63 -0.9
765,529 - 10002 mRNA_1634 0.64 -0.4
765,547 - 10002 mRNA_1634 0.65 1.0
765,652 + 10002 mRNA_1634 0.71 -1.0
765,710 + 10002 mRNA_1634 0.74 -1.1
765,863 + 10002 mRNA_1634 0.82 -0.8
766,005 - 10002 mRNA_1634 0.89 -0.2
766,210 + 0.7
766,315 + -0.3
766,328 - -0.1
766,600 + -0.2
766,603 + 1.5
766,908 - 0.7
766,909 + 0.4
766,909 + -0.8
767,051 + -0.7
767,053 - 1.0
767,178 - -2.2
767,189 - 0.2