Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1570

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1569: 9937 - KOG3114 Uncharacterized conserved protein, at 616331 to 617555 9937 mRNA_1570: 9938 - KOG2533 Permease of the major facilitator superfamily, at 617747 to 619889 9938 mRNA_1571: 9939 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 620682 to 623667 9939

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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616,950 - 9937 mRNA_1569 0.51 0.6
618,088 + 9938 mRNA_1570 0.16 0.2
618,105 + 9938 mRNA_1570 0.17 -0.2
618,195 + 9938 mRNA_1570 0.21 2.4
618,232 - 9938 mRNA_1570 0.23 0.7
618,238 + 9938 mRNA_1570 0.23 -0.2
618,516 + 9938 mRNA_1570 0.36 0.6
618,523 + 9938 mRNA_1570 0.36 -0.7
618,669 - 9938 mRNA_1570 0.43 -0.1
618,681 - 9938 mRNA_1570 0.44 0.2
618,829 - 9938 mRNA_1570 0.50 -0.4
618,925 - 9938 mRNA_1570 0.55 0.2
618,949 - 9938 mRNA_1570 0.56 -0.1
619,013 - 9938 mRNA_1570 0.59 -1.5
619,022 + 9938 mRNA_1570 0.59 -1.3
619,127 + 9938 mRNA_1570 0.64 0.5
619,128 - 9938 mRNA_1570 0.64 -2.6
619,139 + 9938 mRNA_1570 0.65 1.5
619,274 + 9938 mRNA_1570 0.71 1.7
619,429 + 9938 mRNA_1570 0.78 -0.4
619,433 - 9938 mRNA_1570 0.79 -0.6
619,533 - 9938 mRNA_1570 0.83 0.8
619,852 - 0.0
619,863 - 1.1
619,991 - 0.8
620,004 - -2.7
620,019 - 2.1
620,022 - -0.3
620,028 + 0.4
620,029 - 2.1
620,029 + -0.3
620,029 + 0.1
620,029 + 0.4
620,038 - -0.2
620,042 + -0.9
620,043 - -1.5
620,044 + 0.8
620,046 + -0.1
620,054 + -0.2
620,060 + 0.9
620,087 - 0.4
620,093 - -0.8
620,094 - 0.2
620,157 + -0.1
620,172 - 1.3
620,184 + 0.8
620,190 + -0.6
620,191 + -0.0
620,214 + 1.8
620,220 - 0.5
620,240 - 0.9
620,248 + 0.0
620,284 + 0.9
620,292 + 1.1
620,295 + -0.4
620,301 + 2.1
620,305 - 1.9
620,305 + 1.0
620,305 + 0.2
620,306 - -1.4
620,308 - -0.7
620,308 + 0.9
620,311 - -0.1
620,316 - 0.1
620,322 + -1.1
620,332 - 1.1
620,336 - -0.4
620,359 + 1.3
620,359 - -0.0
620,361 - 0.6
620,361 - 0.5
620,408 + 1.9
620,421 + -1.4
620,446 - -0.3
620,468 - 0.5
620,477 + 0.6
620,480 - 0.1
620,485 + 0.9
620,489 + -0.2
620,509 + 0.6
620,517 - 0.4
620,536 + 0.5
620,607 - 0.6
620,654 - -0.2
620,667 + -1.7