Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1539

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1538: 9906 - K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10, at 539427 to 544024 9906 mRNA_1539: 9907 - K13617 PPME1 protein phosphatase methylesterase 1, at 544104 to 545858 9907 mRNA_1540: 9908 - K02870 RP-L12e, RPL12 large subunit ribosomal protein L12e, at 546122 to 547305 9908

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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543,529 - 9906 mRNA_1538 0.89 1.8
543,669 - 0.4
544,146 + -0.1
544,421 - 9907 mRNA_1539 0.18 1.2
544,862 - 9907 mRNA_1539 0.43 -1.3
545,322 + 9907 mRNA_1539 0.69 -1.1
545,576 - 9907 mRNA_1539 0.84 0.4
545,580 + 9907 mRNA_1539 0.84 -0.5
545,593 - 9907 mRNA_1539 0.85 -0.1
545,603 + 9907 mRNA_1539 0.85 0.2
545,708 - -1.2
545,739 + -1.1
545,754 + -1.0
545,754 - -0.0
545,770 + -2.7
545,905 - 0.0