Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1517

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884 mRNA_1517: 9885 - HMMPfam-Alternative oxidase-PF01786,PIRSF--PIRSF005229, at 494782 to 496298 9885 mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496923 to 498027 9886

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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493,826 - -1.5
493,853 + 1.0
493,863 + -0.1
493,867 + 0.1
493,908 - -0.3
493,923 - 0.9
493,926 + -0.1
493,939 - -0.3
493,943 - 1.3
493,951 - -0.0
493,977 - -0.6
494,022 + -1.1
494,025 + 0.1
494,033 + 1.5
494,033 - -0.6
494,037 + -0.1
494,039 - 1.4
494,054 - 0.1
494,060 + -0.5
494,112 - -0.4
494,114 - 0.1
494,115 + 1.1
494,120 - 0.3
494,124 + -0.3
494,127 + 1.1
494,131 + -1.4
494,132 - -0.1
494,163 - -1.0
494,169 + -1.0
494,184 + 0.3
494,195 - -0.4
494,204 + 0.1
494,204 - -2.2
494,214 + 0.1
494,214 - 0.6
494,219 + 2.2
494,219 + -0.5
494,229 + 0.9
494,240 + -0.9
494,240 + 0.1
494,241 + 0.4
494,261 + -0.8
494,271 - -1.4
494,271 - -0.3
494,277 + -1.5
494,286 - 0.2
494,287 - -1.1
494,289 - 0.0
494,291 + -0.7
494,292 + 0.2
494,311 - 1.8
494,311 - 2.4
494,318 + -1.8
494,318 + 0.3
494,321 + -0.5
494,321 + 1.4
494,323 - 0.7
494,325 - 0.3
494,326 - 1.0
494,330 - -0.2
494,330 + -0.2
494,332 + 0.9
494,335 + 0.0
494,343 + 0.1
494,390 + 1.0
494,431 + -0.7
494,450 + -0.0
494,473 + 0.3
494,475 + 0.2
494,530 + -0.9
494,572 + 0.5
494,583 + 0.1
494,594 + 1.4
494,625 - -0.3
494,626 + -1.4
494,654 - 0.7
494,658 + 1.1
494,687 - 0.1
494,740 - -0.3
494,791 + -0.6
494,823 + 1.0
494,880 + 0.1
494,901 - 0.2
494,919 - 0.0
494,967 + 9885 mRNA_1517 0.12 -0.8
494,981 - 9885 mRNA_1517 0.13 0.2
495,002 + 9885 mRNA_1517 0.15 -1.4
495,006 + 9885 mRNA_1517 0.15 1.2
495,054 - 9885 mRNA_1517 0.18 2.5
495,125 + 9885 mRNA_1517 0.23 0.3
495,151 - 9885 mRNA_1517 0.24 0.3
495,156 + 9885 mRNA_1517 0.25 -0.4
495,216 - 9885 mRNA_1517 0.29 -0.3
495,216 - 9885 mRNA_1517 0.29 1.3
495,356 - 9885 mRNA_1517 0.38 -1.6
495,470 + 9885 mRNA_1517 0.45 0.6
495,479 + 9885 mRNA_1517 0.46 0.7
496,039 - 9885 mRNA_1517 0.83 -2.3
496,039 - 9885 mRNA_1517 0.83 -2.4
496,317 + -1.1
496,346 - -2.2
496,400 - 0.3
496,466 + 1.2
496,476 + -0.7
496,488 + -0.3
496,556 + -0.6
496,578 - 0.2
496,595 + -1.0
496,596 + -0.4
496,606 + -1.7
496,613 + 0.0
496,652 - 0.8
496,690 + -1.2
496,691 + -0.1
496,696 + -1.2
496,696 + -1.7
496,699 - 0.1
496,716 - -0.5
496,753 - 0.7
496,772 - 1.9
496,772 - 1.3
496,772 - 0.9
496,782 + 1.1
496,785 - -1.1
496,787 + 0.4
496,789 + 2.0
496,795 + 0.4
496,799 + 0.6
496,799 + -0.4
496,806 + -0.5
496,823 + 2.0
496,909 + -2.5
497,184 + 9886 mRNA_1518 0.24 -2.4