Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1514

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1513: 9881 - K13280 SEC11, sipW signal peptidase, endoplasmic reticulum-type, at 485460 to 486499 9881 mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486604 to 488267 9882 mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488446 to 491742 9883

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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486,584 - 0.4
486,595 + 0.4
486,703 - 0.5
486,864 + 9882 mRNA_1514 0.16 0.2
486,866 + 9882 mRNA_1514 0.16 -0.7
487,453 - 9882 mRNA_1514 0.51 1.0
487,913 - 9882 mRNA_1514 0.79 0.1
488,058 + 9882 mRNA_1514 0.87 -0.0
488,073 + 9882 mRNA_1514 0.88 0.9
488,166 - 2.4
488,185 - 1.1
488,341 - 0.7
488,372 + 0.3
488,382 - -0.3
488,493 - -1.0
488,498 - -1.4
488,500 - 0.3
488,505 + -0.2
488,513 + 1.4
488,521 + 2.5
488,647 + 0.9
488,793 + 9883 mRNA_1515 0.11 3.6
488,822 + 9883 mRNA_1515 0.11 -0.0
488,926 + 9883 mRNA_1515 0.15 0.4
489,243 + 9883 mRNA_1515 0.24 0.1