Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1497

Experiments: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447917 to 450188 9864 mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450422 to 453504 9865 mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454122 to 455195 9866

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
449,514 - 9864 mRNA_1496 0.70 0.6
449,638 + 9864 mRNA_1496 0.76 1.4
449,925 + 9864 mRNA_1496 0.88 -2.4
449,968 + 1.7
450,031 + -0.2
450,203 - -0.3
450,285 - 2.2
450,394 + -0.2
450,534 - -0.9
450,729 + -0.5
451,098 + 9865 mRNA_1497 0.22 1.6
451,117 - 9865 mRNA_1497 0.23 0.8
451,207 - 9865 mRNA_1497 0.25 1.7
451,366 - 9865 mRNA_1497 0.31 -0.6
451,377 + 9865 mRNA_1497 0.31 0.1
451,441 + 9865 mRNA_1497 0.33 -0.2
451,507 + 9865 mRNA_1497 0.35 0.4
451,558 - 9865 mRNA_1497 0.37 -0.4
451,561 - 9865 mRNA_1497 0.37 0.0
451,573 + 9865 mRNA_1497 0.37 -0.7
451,836 + 9865 mRNA_1497 0.46 -0.0
451,837 - 9865 mRNA_1497 0.46 -1.3
452,025 + 9865 mRNA_1497 0.52 -0.4
452,135 - 9865 mRNA_1497 0.56 1.6
452,193 - 9865 mRNA_1497 0.57 -2.3
452,439 + 9865 mRNA_1497 0.65 -0.4
452,684 - 9865 mRNA_1497 0.73 -1.1
452,742 - 9865 mRNA_1497 0.75 -0.2
452,846 - 9865 mRNA_1497 0.79 -1.2
452,980 - 9865 mRNA_1497 0.83 -0.6
453,007 - 9865 mRNA_1497 0.84 0.6
453,014 - 9865 mRNA_1497 0.84 -0.5
453,023 - 9865 mRNA_1497 0.84 -0.8
453,133 + 9865 mRNA_1497 0.88 1.6
453,167 - 9865 mRNA_1497 0.89 -0.4
453,280 - 0.2
453,300 + 1.7
453,318 + -0.5
453,421 - -0.6
453,467 + 1.6
453,563 - -1.5
453,596 - -1.0
453,598 - 1.1
453,602 - 0.5
453,603 - -0.9
453,606 + -0.8
453,625 + 0.5
453,635 - 0.3
453,638 - -0.5
453,638 + -0.5
453,653 + -0.8
453,658 + 0.9
453,667 + 0.2
453,682 - -5.1
453,771 + 0.1
453,793 - -0.5
453,795 - -0.0
453,816 + -0.7
453,818 - 0.2
453,822 - 1.2
453,833 + -0.7
453,833 - -1.8
453,834 + -0.5
453,836 - 1.8
453,837 + 0.3
453,856 + 0.5
453,874 + -1.1
453,968 + 0.1
453,974 + 0.7
453,990 + -0.0
453,991 + -0.1
453,993 - 0.3