Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1496

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1495: 9863 - Hypothetical Protein, at 444439 to 447391 9863 mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447917 to 450188 9864 mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450422 to 453504 9865

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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447,245 + 1.0
447,364 - -0.4
447,385 + -1.6
447,505 + 0.2
447,551 - -2.5
447,551 - -1.0
447,656 - 0.7
447,674 + -1.5
447,674 + -0.1
447,680 - 0.1
447,693 + 0.6
447,706 + -0.4
447,712 - 2.0
447,724 - 0.6
447,726 - 0.3
447,744 - 3.1
447,746 - -0.3
447,748 + 0.3
447,751 + 1.3
447,759 - 0.1
447,773 - 0.3
447,774 + -0.2
447,774 + 0.9
447,787 + -0.1
447,795 - 0.0
447,796 + -0.3
447,797 + 0.2
447,807 - -0.1
447,814 + -1.0
447,818 - 0.9
447,864 + -2.2
447,865 - -0.4
447,868 - 0.1
447,980 - 0.7
447,983 - -0.9
447,989 - 0.7
448,013 - -1.3
448,018 + -0.1
449,190 - 9864 mRNA_1496 0.56 0.0
449,514 - 9864 mRNA_1496 0.70 0.6
449,638 + 9864 mRNA_1496 0.76 1.4
449,925 + 9864 mRNA_1496 0.88 -2.4
449,968 + 1.7
450,031 + -0.2
450,203 - -0.3
450,285 - 2.2
450,394 + -0.2
450,534 - -0.9
450,729 + -0.5
451,098 + 9865 mRNA_1497 0.22 1.6
451,117 - 9865 mRNA_1497 0.23 0.8