Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1483

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1482: 9850 - BLAST zn -c6 transcription factor [Malassezia pachyderm..., at 409012 to 409512 9850 mRNA_1483: 9851 - BLAST Protein priB [Grifola frondosa], at 409791 to 410399 9851 mRNA_1484: 9852 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF161111, at 410749 to 412587 9852

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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408,933 - 2.9
409,093 + 9850 mRNA_1482 0.16 -0.4
409,229 + 9850 mRNA_1482 0.43 -0.1
409,381 + 9850 mRNA_1482 0.74 -0.5
409,431 - 9850 mRNA_1482 0.84 0.6
409,456 + 9850 mRNA_1482 0.89 0.5
409,496 - -1.0
409,527 - -0.7
409,582 + -0.2
409,737 + 1.2
409,783 + 0.2
410,170 - 9851 mRNA_1483 0.62 0.0
410,649 + 0.1
410,889 + 0.8
411,020 + 9852 mRNA_1484 0.15 1.5
411,097 + 9852 mRNA_1484 0.19 0.2
411,170 - 9852 mRNA_1484 0.23 1.1
411,382 + 9852 mRNA_1484 0.34 0.7