Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1460

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1459: 9827 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 342894 to 344123 9827 mRNA_1460: 9828 - K06911 K06911 uncharacterized protein, at 344701 to 345995 9828 mRNA_1461: 9829 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 346696 to 347592 9829

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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343,794 + 9827 mRNA_1459 0.73 2.3
343,800 - 9827 mRNA_1459 0.74 -0.2
343,812 + 9827 mRNA_1459 0.75 -1.4
343,814 - 9827 mRNA_1459 0.75 -0.0
343,842 - 9827 mRNA_1459 0.77 -0.1
343,845 - 9827 mRNA_1459 0.77 -1.4
343,851 + 9827 mRNA_1459 0.78 0.1
343,851 + 9827 mRNA_1459 0.78 1.0
343,877 - 9827 mRNA_1459 0.80 2.8
343,989 - 9827 mRNA_1459 0.89 -0.3
344,112 - -1.7
344,140 + 0.4
344,148 + 0.4
344,285 + 0.6
344,288 + 1.9
344,296 - 1.4
344,302 + 0.0
344,411 - -0.0
344,430 - -0.6
344,717 - 0.3
344,747 - 1.8
344,865 - 9828 mRNA_1460 0.13 0.2
345,020 - 9828 mRNA_1460 0.25 0.2
345,172 + 9828 mRNA_1460 0.36 0.1
345,614 + 9828 mRNA_1460 0.71 2.8
345,883 + 0.4
345,887 - -0.6
345,887 - 1.8
346,045 + 0.8
346,183 - -0.8
346,184 - 1.4
346,320 - 1.8
346,483 + -0.7
346,504 - -0.6
346,922 + 9829 mRNA_1461 0.25 0.4