Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1391

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156559 to 159898 9758 mRNA_1391: 9759 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 160091 to 161111 9759 mRNA_1392: 9760 - HMMPfam-DASH complex subunit Dam1-PF08653, at 161776 to 163110 9760

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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159,091 + 9758 mRNA_1390 0.76 0.7
159,213 - 9758 mRNA_1390 0.79 0.6
159,645 - 1.4
159,657 + 0.3
159,659 - -0.4
159,909 + 0.3
159,954 - 0.3
160,369 + 9759 mRNA_1391 0.27 -0.1
160,664 - 9759 mRNA_1391 0.56 -0.7
160,693 + 9759 mRNA_1391 0.59 -0.1
160,802 - 9759 mRNA_1391 0.70 -0.3
160,850 + 9759 mRNA_1391 0.74 -0.3
161,101 - -0.0
161,125 + -0.6
161,275 - -0.1
161,282 - -1.3
161,292 - 0.0
161,416 - -0.5
161,429 - -0.2
161,555 - -0.4