Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1356

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1356: 9724 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 74218 to 78285 9724

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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73,269 - -0.5
73,297 - 0.9
73,306 - -0.1
73,308 - -0.1
73,310 - 0.7
73,314 - -0.1
73,337 - 2.2
73,338 + -1.5
73,343 - -0.6
73,345 - -0.7
73,352 - 0.4
73,353 + -0.4
73,359 - -0.0
73,360 - -0.5
73,368 + -1.7
73,459 + 1.5
73,493 - 0.3
73,498 + -0.3
73,506 - 0.5
73,521 - 0.6
73,558 - -0.3
73,591 + 0.9
73,601 - -0.9
73,630 - 0.9
73,631 - 0.4
73,647 - -4.0
73,649 - -1.1
73,654 + 0.0
73,662 - 3.2
73,663 + 0.5
73,666 - -0.2
73,668 + -0.4
73,747 - -0.3
73,794 + 0.6
73,840 + 0.4
73,846 + -0.2
73,850 - 1.6
73,850 + -0.8
73,867 - -0.1
73,869 - 0.0
73,869 - 0.3
73,877 - 1.1
73,901 - 0.3
73,926 - -0.4
73,949 - -1.9
74,007 - 0.8
74,035 - -0.4
74,042 + -0.7
74,046 - -0.3
74,050 - 0.8
74,050 + 3.1
74,050 + -0.4
74,051 + 0.3
74,060 + 0.6
74,068 + 0.5
74,083 + -0.7
74,083 + -1.2
74,202 + 0.4
74,203 - 0.6
74,250 - -0.5
74,254 - 1.3
74,309 - -0.1
74,374 - 0.3
74,382 + -0.3
74,404 + 0.4
74,404 + -0.3
74,514 + 0.1
74,517 - 0.8
74,517 - 0.1
74,544 - -0.2
74,567 + 0.6
74,678 - 9724 mRNA_1356 0.11 -0.3
74,711 - 9724 mRNA_1356 0.12 0.3
75,003 - 9724 mRNA_1356 0.19 0.7
75,096 - 9724 mRNA_1356 0.22 -0.9
75,128 + 9724 mRNA_1356 0.22 -0.1
75,138 + 9724 mRNA_1356 0.23 -1.2
75,513 - 9724 mRNA_1356 0.32 0.3
75,785 + 9724 mRNA_1356 0.39 0.6
75,842 + 9724 mRNA_1356 0.40 1.0
75,843 + 9724 mRNA_1356 0.40 -0.1
76,125 - 9724 mRNA_1356 0.47 1.6
76,177 + 9724 mRNA_1356 0.48 -1.1
76,246 + 9724 mRNA_1356 0.50 -0.2
76,280 - 9724 mRNA_1356 0.51 0.9
76,597 + 9724 mRNA_1356 0.58 0.5
76,600 + 9724 mRNA_1356 0.59 1.4
76,680 - 9724 mRNA_1356 0.61 0.5
76,762 - 9724 mRNA_1356 0.63 1.4
76,770 - 9724 mRNA_1356 0.63 -0.3
76,859 - 9724 mRNA_1356 0.65 0.3
76,859 + 9724 mRNA_1356 0.65 0.1
76,886 + 9724 mRNA_1356 0.66 0.3
77,008 - 9724 mRNA_1356 0.69 -0.4
77,301 + 9724 mRNA_1356 0.76 0.2
77,335 + 9724 mRNA_1356 0.77 0.3
77,429 - 9724 mRNA_1356 0.79 -0.2
77,596 - 9724 mRNA_1356 0.83 0.4
77,979 + -0.4
78,039 - -0.6
78,181 + 1.0
78,197 - 0.1
78,788 + 1.7
78,988 + -0.9
79,074 - 0.7
79,097 + 0.2
79,213 - 1.1
79,234 + 0.2