Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1345

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1344: 9712 - K06063 SNW1, SKIIP, SKIP SNW domain-containing protein 1, at 45254 to 47593 9712 mRNA_1345: 9713 - KOG2533 Permease of the major facilitator superfamily, at 47713 to 50221 9713 mRNA_1346: 9714 - Hypothetical Protein, at 50487 to 51327 9714

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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47,611 + -0.5
47,616 - 0.2
47,746 - -0.3
47,747 - 2.1
47,751 + 1.6
47,754 - 0.2
47,763 - -0.7
47,764 + -0.6
47,855 + -0.5
47,901 - 0.7
47,907 - -1.2
48,006 - 9713 mRNA_1345 0.12 0.4
48,058 - 9713 mRNA_1345 0.14 -1.1
48,095 + 9713 mRNA_1345 0.15 0.8
48,185 + 9713 mRNA_1345 0.19 0.8
48,605 - 9713 mRNA_1345 0.36 -0.6
48,606 - 9713 mRNA_1345 0.36 2.0
48,775 - 9713 mRNA_1345 0.42 -0.3
48,906 - 9713 mRNA_1345 0.48 1.1
48,928 - 9713 mRNA_1345 0.48 -0.8
48,933 - 9713 mRNA_1345 0.49 0.8
48,936 - 9713 mRNA_1345 0.49 0.4
48,938 - 9713 mRNA_1345 0.49 -0.7
48,945 + 9713 mRNA_1345 0.49 1.8
49,216 - 9713 mRNA_1345 0.60 0.4
49,391 + 9713 mRNA_1345 0.67 1.0
49,422 + 9713 mRNA_1345 0.68 0.4
49,489 + 9713 mRNA_1345 0.71 -0.1
49,497 - 9713 mRNA_1345 0.71 1.1
49,516 + 9713 mRNA_1345 0.72 0.3
49,602 - 9713 mRNA_1345 0.75 -1.1
49,648 - 9713 mRNA_1345 0.77 0.3
49,818 - 9713 mRNA_1345 0.84 -0.4
49,820 + 9713 mRNA_1345 0.84 -0.9
49,921 - 9713 mRNA_1345 0.88 -0.2
49,962 - 9713 mRNA_1345 0.90 0.2
50,203 + -2.1
50,239 + -0.7
50,432 + -1.0
50,481 + -0.2
50,484 - 0.3
50,517 + -0.9
50,688 + 9714 mRNA_1346 0.24 0.6
50,711 + 9714 mRNA_1346 0.27 0.3
50,725 + 9714 mRNA_1346 0.28 1.2
50,821 - 9714 mRNA_1346 0.40 0.2
50,856 + 9714 mRNA_1346 0.44 0.3
51,021 - 9714 mRNA_1346 0.63 0.3
51,118 + 9714 mRNA_1346 0.75 -3.0