Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1343

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1342: 9710 - SUPERFAMILY--SSF52047, at 39256 to 40650 9710 mRNA_1343: 9711 - K00698 CHS1 chitin synthase, at 40770 to 45014 9711 mRNA_1344: 9712 - K06063 SNW1, SKIIP, SKIP SNW domain-containing protein 1, at 45254 to 47593 9712

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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39,799 + 9710 mRNA_1342 0.39 -0.3
40,048 - 9710 mRNA_1342 0.57 0.2
40,083 - 9710 mRNA_1342 0.59 0.8
40,409 - 9710 mRNA_1342 0.83 1.3
40,633 + 1.2
40,800 + -0.7
40,967 - 0.7
40,968 + 0.1
41,017 + 0.2
41,320 - 9711 mRNA_1343 0.13 0.2
41,595 - 9711 mRNA_1343 0.19 -0.1
42,056 - 9711 mRNA_1343 0.30 -0.4
42,125 - 9711 mRNA_1343 0.32 1.0
42,200 - 9711 mRNA_1343 0.34 -1.1
42,356 + 9711 mRNA_1343 0.37 1.5
42,507 - 9711 mRNA_1343 0.41 1.6
42,583 - 9711 mRNA_1343 0.43 -0.1
42,642 - 9711 mRNA_1343 0.44 -0.1
42,713 + 9711 mRNA_1343 0.46 1.3
42,784 - 9711 mRNA_1343 0.47 0.8
42,825 - 9711 mRNA_1343 0.48 1.2
42,835 + 9711 mRNA_1343 0.49 1.1
42,959 - 9711 mRNA_1343 0.52 -0.0
42,993 + 9711 mRNA_1343 0.52 -0.4
43,046 + 9711 mRNA_1343 0.54 -0.7
43,215 - 9711 mRNA_1343 0.58 -1.3
43,229 + 9711 mRNA_1343 0.58 -1.5
43,279 + 9711 mRNA_1343 0.59 -0.2
43,280 + 9711 mRNA_1343 0.59 -0.4
43,331 + 9711 mRNA_1343 0.60 0.3
43,361 - 9711 mRNA_1343 0.61 -0.2
43,374 - 9711 mRNA_1343 0.61 0.3
43,425 - 9711 mRNA_1343 0.63 -1.2
43,429 + 9711 mRNA_1343 0.63 -0.6
43,431 - 9711 mRNA_1343 0.63 -0.3
43,532 - 9711 mRNA_1343 0.65 0.4
43,546 - 9711 mRNA_1343 0.65 0.2
43,552 + 9711 mRNA_1343 0.66 1.8
43,552 + 9711 mRNA_1343 0.66 -0.7
43,552 + 9711 mRNA_1343 0.66 -0.6
43,552 + 9711 mRNA_1343 0.66 2.5
43,663 - 9711 mRNA_1343 0.68 -0.6
43,681 - 9711 mRNA_1343 0.69 -1.0
43,821 - 9711 mRNA_1343 0.72 1.4
44,114 + 9711 mRNA_1343 0.79 0.6
44,281 - 9711 mRNA_1343 0.83 -0.0
44,510 + 9711 mRNA_1343 0.88 -0.7
44,890 + 1.7
44,991 + 1.0
45,108 + 0.1
45,131 + 0.5
45,186 - -0.3
45,188 - 0.6
45,189 + -0.6
45,189 + 0.6