Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1335

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1334: 9702 - HMMPfam-RNA polymerase II transcription elongation factor-PF09816, at 24367 to 26303 9702 mRNA_1335: 9703 - HMMPfam-Cysteine-rich TM module stress tolerance-PF12734, at 26595 to 27216 9703 mRNA_1336: 9704 - K01850 E5.4.99.5 chorismate mutase, at 27527 to 28944 9704

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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25,631 + 9702 mRNA_1334 0.65 -0.9
25,632 - 9702 mRNA_1334 0.65 -1.1
25,769 - 9702 mRNA_1334 0.72 -1.6
25,776 + 9702 mRNA_1334 0.73 -1.0
25,909 + 9702 mRNA_1334 0.80 0.5
26,059 + 9702 mRNA_1334 0.87 -0.5
26,211 + 1.2
26,263 + 2.0
26,367 - 0.0
26,497 + -0.1
26,539 - -1.4
26,663 - 9703 mRNA_1335 0.11 0.3
26,816 + 9703 mRNA_1335 0.36 0.2
26,822 + 9703 mRNA_1335 0.36 -0.1
27,073 + 9703 mRNA_1335 0.77 -0.6
27,389 - 0.1
27,408 + -1.0
27,522 - -0.2