Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1270

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796569 to 799890 9637 mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936 9638 mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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799,623 - -0.1
799,635 - 1.4
799,778 - 0.4
799,917 + -2.0
799,946 + 1.0
799,974 - -2.0
800,046 - 0.6
800,083 - -1.0
800,125 - -0.2
800,198 - -0.0
800,220 - -0.6
800,240 - -0.6
800,242 + -0.0
800,245 + 0.5
800,246 - -0.3
800,247 + 0.8
800,366 + 1.2
800,508 - -0.6
800,516 + 0.1
800,593 - -1.3
800,637 - 0.0
800,652 - -1.1
800,694 - 0.2
800,711 - -0.8
800,721 + 0.5
800,961 + 9638 mRNA_1270 0.16 1.0
801,332 + 9638 mRNA_1270 0.32 1.4
801,398 + 9638 mRNA_1270 0.34 -1.0
801,401 + 9638 mRNA_1270 0.34 0.5
801,411 - 9638 mRNA_1270 0.35 0.0
801,669 - 9638 mRNA_1270 0.46 1.0
801,784 + 9638 mRNA_1270 0.51 -1.9
801,854 - 9638 mRNA_1270 0.54 0.2
802,273 + 9638 mRNA_1270 0.72 0.1
802,283 + 9638 mRNA_1270 0.72 0.1
802,423 + 9638 mRNA_1270 0.78 1.0
802,994 + 0.4
803,005 + 0.8
803,020 + 0.6
803,137 - 1.5
803,141 + -1.4
803,158 + 0.8
803,183 - 0.7
803,199 - 0.4
803,296 + -0.7
803,302 + -1.0
803,311 - -0.2
803,333 + -0.5
803,456 - 0.5
803,463 + -0.9
803,464 - 0.2
803,465 - 0.2
803,623 - 0.4
803,787 + 9639 mRNA_1271 0.11 0.0
803,864 + 9639 mRNA_1271 0.13 0.9
803,894 - 9639 mRNA_1271 0.14 1.3