Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1267

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1266: 9634 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 791102 to 792635 9634 mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793138 to 795041 9635 mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795406 to 796307 9636

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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792,352 - 9634 mRNA_1266 0.81 -0.5
792,640 + -0.1
792,755 - 0.0
792,761 - -0.1
792,762 - -0.3
792,789 - 0.3
792,789 + 0.1
792,808 - 1.2
792,844 + 0.3
792,846 + 0.7
792,846 + 0.9
792,910 + 2.1
792,943 - 0.7
792,997 + 0.5
793,028 - -4.2
793,032 - -0.3
793,055 - 0.2
793,058 - 0.4
793,065 + -1.4
793,072 - -0.3
793,075 - -0.4
793,084 + 0.0
793,165 + 0.1
793,167 - -2.8
793,218 + -3.4
793,223 - -3.3
793,351 - 9635 mRNA_1267 0.11 -3.6
793,354 + 9635 mRNA_1267 0.11 -3.0
793,370 - 9635 mRNA_1267 0.12 -4.9
793,373 + 9635 mRNA_1267 0.12 -3.2
793,500 - 9635 mRNA_1267 0.19 -2.0
793,507 + 9635 mRNA_1267 0.19 -3.3
793,521 - 9635 mRNA_1267 0.20 -4.4
793,649 - 9635 mRNA_1267 0.27 -2.8
794,072 - 9635 mRNA_1267 0.49 -1.0
794,239 + 9635 mRNA_1267 0.58 -1.3
794,346 + 9635 mRNA_1267 0.63 -2.8
794,379 - 9635 mRNA_1267 0.65 -2.4
794,503 + 9635 mRNA_1267 0.72 -2.1
794,534 + 9635 mRNA_1267 0.73 -4.7
794,652 - 9635 mRNA_1267 0.80 -2.9
794,860 + -5.3
795,071 + 1.4
795,075 + -0.0
795,102 + 0.2
795,113 + -0.5
795,122 - 1.4
795,130 + 1.2
795,131 - -1.1
795,144 - -0.6
795,229 + 0.0
795,232 - -0.0
795,257 - -0.6
795,274 + 0.9
795,332 - -0.1
795,351 + 0.3
795,446 - -0.1
795,467 + 0.8
795,563 - 9636 mRNA_1268 0.17 1.0
795,874 - 9636 mRNA_1268 0.52 3.3
795,916 - 9636 mRNA_1268 0.57 -0.3
795,984 + 9636 mRNA_1268 0.64 -0.7
796,039 + 9636 mRNA_1268 0.70 0.1