Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1244

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1243: 9611 - K02493 hemK, prmC, HEMK release factor glutamine methyltransferase, at 738287 to 739305 9611 mRNA_1244: 9612 - SUPERFAMILY--SSF52047, at 739687 to 741319 9612 mRNA_1245: 9613 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 741721 to 743435 9613

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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739,182 + 9611 mRNA_1243 0.88 0.6
739,310 + 0.4
739,455 - -0.0
739,458 - -2.4
739,461 + -0.7
739,480 + -0.4
739,596 - -0.8
739,606 - 0.2
739,609 - 1.3
739,628 - 3.0
739,634 - 0.2
739,635 + 0.3
739,639 + -1.0
739,770 + -1.2
739,771 - -0.8
739,778 + -0.3
739,782 + -1.1
739,914 - 9612 mRNA_1244 0.14 0.1
739,918 - 9612 mRNA_1244 0.14 0.7
739,963 - 9612 mRNA_1244 0.17 -1.1
740,346 + 9612 mRNA_1244 0.40 0.2
740,411 - 9612 mRNA_1244 0.44 -2.6
740,421 + 9612 mRNA_1244 0.45 0.3
740,555 - 9612 mRNA_1244 0.53 0.2
740,562 + 9612 mRNA_1244 0.54 0.7
740,608 + 9612 mRNA_1244 0.56 1.6
740,635 + 9612 mRNA_1244 0.58 -0.2
740,906 + 9612 mRNA_1244 0.75 1.0
741,093 - 9612 mRNA_1244 0.86 1.3
741,258 + 1.7
741,354 + -0.3
741,529 + -1.7
741,636 - 0.8
741,654 - 0.0
741,660 - -2.1
741,948 - 9613 mRNA_1245 0.13 -0.8