Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1241

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732640 to 733855 9608 mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734372 to 735961 9609 mRNA_1242: 9610 - K01110 PTEN phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, at 736191 to 738180 9610

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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733,468 + 9608 mRNA_1240 0.68 0.5
733,597 + 9608 mRNA_1240 0.79 3.1
733,644 + 9608 mRNA_1240 0.83 1.0
733,684 - 9608 mRNA_1240 0.86 1.0
733,756 - 0.3
733,758 - 0.3
733,797 + -1.8
733,809 - -0.4
733,896 + 0.2
733,917 - 1.0
734,060 - 0.7
734,173 - -1.9
734,181 + 0.6
734,384 + 0.4
735,067 - 9609 mRNA_1241 0.44 0.0
735,255 + 9609 mRNA_1241 0.56 0.1
735,676 + 9609 mRNA_1241 0.82 -0.7
735,884 - -2.2
735,966 - 1.4
736,091 + -0.7
736,098 + 0.6
736,116 - -0.8
736,121 - 1.4
736,121 - 0.2
736,398 - 9610 mRNA_1242 0.10 0.8
736,406 - 9610 mRNA_1242 0.11 -0.8
736,406 - 9610 mRNA_1242 0.11 1.0
736,406 - 9610 mRNA_1242 0.11 0.7
736,425 - 9610 mRNA_1242 0.12 0.8
736,433 + 9610 mRNA_1242 0.12 -0.0
736,713 - 9610 mRNA_1242 0.26 -2.2
736,846 - 9610 mRNA_1242 0.33 0.5
736,954 - 9610 mRNA_1242 0.38 -0.5