Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1240

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1239: 9607 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 729414 to 732263 9607 mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732640 to 733855 9608 mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734372 to 735961 9609

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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731,796 + 9607 mRNA_1239 0.84 0.7
732,129 + 0.0
732,174 + -1.5
732,423 + 1.4
732,424 + -0.7
732,470 + 0.4
732,622 - -0.3
732,747 - -0.5
732,749 - -2.1
732,757 + -0.8
732,761 + -0.9
732,785 - 9608 mRNA_1240 0.12 0.8
732,787 + 9608 mRNA_1240 0.12 -0.3
733,079 + 9608 mRNA_1240 0.36 -1.5
733,345 + 9608 mRNA_1240 0.58 0.3
733,468 + 9608 mRNA_1240 0.68 0.5
733,597 + 9608 mRNA_1240 0.79 3.1
733,644 + 9608 mRNA_1240 0.83 1.0
733,684 - 9608 mRNA_1240 0.86 1.0
733,756 - 0.3
733,758 - 0.3
733,797 + -1.8
733,809 - -0.4
733,896 + 0.2
733,917 - 1.0
734,060 - 0.7
734,173 - -1.9
734,181 + 0.6
734,384 + 0.4