Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1162

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1161: 9529 - K03028 PSMD2, RPN1 26S proteasome regulatory subunit N1, at 543983 to 547395 9529 mRNA_1162: 9530 - SUPERFAMILY--SSF52047, at 547799 to 548923 9530 mRNA_1163: 9531 - KOG1378 Purple acid phosphatase, at 549366 to 551873 9531

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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547,492 + 1.1
547,499 + 0.4
547,535 + 0.7
547,638 + 0.7
547,679 + 0.0
547,791 - -2.1
547,935 + 9530 mRNA_1162 0.12 1.1
548,130 - 9530 mRNA_1162 0.29 -0.9
548,353 + 9530 mRNA_1162 0.49 0.5
548,640 - 9530 mRNA_1162 0.75 0.2
548,649 + 9530 mRNA_1162 0.76 2.5
548,931 + -0.3
548,953 - 0.5
548,960 + -0.6
548,977 + -0.7
549,107 - -0.4
549,116 - 1.6
549,130 + 0.8
549,132 + 0.4
549,245 + 0.8
549,273 + 0.9
549,276 - 0.7
549,295 + 1.1
549,445 + -0.2
549,548 + 0.1
549,581 - -1.1
549,737 + 9531 mRNA_1163 0.15 -0.2
549,737 + 9531 mRNA_1163 0.15 -0.6
549,855 + 9531 mRNA_1163 0.19 -0.6