Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1118

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1117: 9485 - K13102 KIN DNA/RNA-binding protein KIN17, at 443661 to 444962 9485 mRNA_1118: 9486 - HMMPfam-RTA1 like protein-PF04479, at 445419 to 446946 9486 mRNA_1119: 9487 - Hypothetical Protein, at 447624 to 448229 9487

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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444,967 + -1.6
444,971 - -2.4
445,170 - -0.7
445,175 - -1.2
445,307 - 0.2
445,457 + -0.2
446,055 + 9486 mRNA_1118 0.42 0.1
446,204 + 9486 mRNA_1118 0.51 0.9
446,221 - 9486 mRNA_1118 0.52 0.9
446,448 + 9486 mRNA_1118 0.67 1.4
446,640 + 9486 mRNA_1118 0.80 -0.3
446,653 + 9486 mRNA_1118 0.81 -0.4
446,805 - -0.9
446,859 - -1.1
446,875 + -0.3
446,876 - -0.5
446,903 + -0.4
446,921 + 0.1
446,922 + -0.2
446,941 - 1.7
447,029 + 0.4
447,044 + 0.2
447,084 - 0.2
447,090 - 0.6
447,116 - -0.4
447,117 + -1.0
447,134 - -0.3
447,150 + -0.6
447,167 - -1.4
447,196 - 1.1
447,198 - -0.2
447,200 + 0.6
447,204 - 0.3
447,214 + -0.0
447,232 + -0.3
447,237 - 0.2
447,237 - -0.1
447,237 - -0.6
447,238 - 0.3
447,238 - -0.4
447,240 + 0.2
447,242 - -0.7
447,242 - 0.0
447,242 + -0.6
447,242 - 0.5
447,244 - 0.4
447,255 - -0.5
447,270 + 1.9
447,270 + 1.2
447,273 + 0.0
447,280 - -1.3
447,282 + 1.9
447,286 - -0.2
447,289 - 0.1
447,306 - -1.0
447,307 - -0.2
447,321 + -1.2
447,321 + 0.6
447,321 + -0.5
447,322 - 0.3
447,328 - 2.4
447,345 + -0.3
447,421 + -0.1
447,424 + 0.6
447,437 - -0.5
447,447 + 0.4
447,578 - -0.1
447,580 + -1.0
447,608 + -0.8
447,715 + 9487 mRNA_1119 0.15 -0.9
447,835 + 9487 mRNA_1119 0.35 1.2
447,872 + 9487 mRNA_1119 0.41 -0.4
447,914 + 9487 mRNA_1119 0.48 -1.0