Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1109

Experiments: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1108: 9476 - KOG1134 Uncharacterized conserved protein, at 422767 to 426748 9476 mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426954 to 427895 9477 mRNA_1110: 9478 - Hypothetical Protein, at 428517 to 429913 9478

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
426,175 + 9476 mRNA_1108 0.86 -3.3
426,297 - 9476 mRNA_1108 0.89 -1.3
426,298 + 9476 mRNA_1108 0.89 -1.1
426,306 - 9476 mRNA_1108 0.89 1.3
426,371 - 0.6
426,449 + -1.8
426,544 + -0.1
426,617 - 0.4
426,797 + -0.0
426,860 + -0.6
426,866 - -0.4
426,876 + -1.5
426,876 + -0.3
426,884 + 1.0
427,001 + -1.5
427,034 + 1.6
427,037 + -0.3
427,055 + 9477 mRNA_1109 0.11 -0.4
427,143 - 9477 mRNA_1109 0.20 -1.0
427,296 + 9477 mRNA_1109 0.36 1.2
427,308 + 9477 mRNA_1109 0.38 -0.5
427,347 - 9477 mRNA_1109 0.42 2.4
427,355 - 9477 mRNA_1109 0.43 1.8
427,472 + 9477 mRNA_1109 0.55 -0.3
427,508 + 9477 mRNA_1109 0.59 -0.0
427,559 + 9477 mRNA_1109 0.64 -0.4
427,559 + 9477 mRNA_1109 0.64 1.7
427,605 - 9477 mRNA_1109 0.69 0.3
427,750 - 9477 mRNA_1109 0.85 0.0
427,758 + 9477 mRNA_1109 0.85 0.2
427,866 + 1.0
427,892 - -1.4
427,899 + 2.1
427,899 + 0.6
427,989 - 0.8
428,080 + -0.8
428,242 + -1.0
428,486 - 0.2
428,502 - 0.5
428,657 + 9478 mRNA_1110 0.10 -2.3
428,658 + 9478 mRNA_1110 0.10 -1.4
428,665 - 9478 mRNA_1110 0.11 -0.0
428,805 - 9478 mRNA_1110 0.21 -1.3
428,894 - 9478 mRNA_1110 0.27 -1.0