Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1073

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1072: 9440 - Hypothetical Protein, at 341677 to 343060 9440 mRNA_1073: 9441 - Hypothetical Protein, at 343845 to 345302 9441 mRNA_1074: 9442 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SUPERFAMILY--SSF48403, at 346068 to 346985 9442

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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342,897 - 9440 mRNA_1072 0.88 -0.5
342,924 - -0.8
342,941 - 0.6
343,054 - 0.2
343,085 - -0.5
343,097 - -0.4
343,117 + 0.0
343,120 - -0.1
343,145 + -1.1
343,226 - -0.5
343,243 - 0.1
343,244 - -4.3
343,245 - -0.3
343,253 + 0.8
343,261 - 0.6
343,264 + -0.6
343,273 + -0.2
343,291 - -0.1
343,300 + 1.0
343,326 - 0.3
343,345 - -1.3
343,346 + -0.5
343,375 - -0.2
343,424 - -0.6
343,424 + 0.2
343,451 + -0.9
343,566 + 0.4
343,584 - 0.6
343,693 + -1.4
344,009 + 9441 mRNA_1073 0.11 -0.7
344,250 - 9441 mRNA_1073 0.28 0.7
344,271 + 9441 mRNA_1073 0.29 -0.2
344,542 - 9441 mRNA_1073 0.48 1.5
344,723 - 9441 mRNA_1073 0.60 -0.6
344,837 - 9441 mRNA_1073 0.68 0.9
344,951 + 9441 mRNA_1073 0.76 2.1
345,059 + 9441 mRNA_1073 0.83 -1.5
345,162 - 0.9
345,166 + 0.4
345,257 - -0.5
345,455 - 1.0
345,461 + 1.7
345,640 - 0.5
345,646 + -0.0
345,931 + -1.4
345,934 - 0.4
346,283 - 9442 mRNA_1074 0.23 -2.5