Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_993

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151634 to 153360 9361 mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154065 to 154836 9362

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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152,336 - 9361 mRNA_993 0.41 0.1
152,532 - 9361 mRNA_993 0.52 -0.6
152,682 + 9361 mRNA_993 0.61 -1.2
152,754 - 9361 mRNA_993 0.65 -0.2
152,775 + 9361 mRNA_993 0.66 0.9
152,790 + 9361 mRNA_993 0.67 -0.2
152,794 + 9361 mRNA_993 0.67 -0.6
152,807 - 9361 mRNA_993 0.68 -0.0
152,859 + 9361 mRNA_993 0.71 -1.8
152,951 - 9361 mRNA_993 0.76 1.0
152,978 + 9361 mRNA_993 0.78 -0.4
152,982 + 9361 mRNA_993 0.78 -2.3
152,992 + 9361 mRNA_993 0.79 -1.0
153,130 - 9361 mRNA_993 0.87 0.3
153,135 - 9361 mRNA_993 0.87 -0.8
153,155 - 9361 mRNA_993 0.88 1.9
153,232 - 0.9
153,251 + 0.1
153,277 - 0.2
153,285 - -0.0
153,286 + -0.8
153,305 - 0.7
153,309 + -1.5
153,341 + -1.0
153,435 - 2.1
153,442 + -0.4
153,454 + -0.8
153,467 - 0.4
153,470 + -0.5
153,482 + 0.2
153,488 - -0.2
153,489 - 1.7
153,490 - 1.6
153,490 - -1.2
153,528 + 0.1
153,546 - -0.4
153,578 + -0.1
153,598 - -1.5
153,685 + -0.5
153,750 - 0.1
153,877 + -0.7
153,998 + -0.0
154,033 + 0.1
154,080 - -0.1
154,093 + -0.8
154,180 - 9362 mRNA_994 0.15 -0.3