Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_919

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_918: 9286 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 2191363 to 2192706 9286 mRNA_919: 9287 - KOG1397 Ca2+/H+ antiporter VCX1 and related proteins, at 2192873 to 2195509 9287 mRNA_920: 9288 - BLAST cytochrome c heme-binding site [Moesziomyces anta..., at 2196157 to 2196942 9288

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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2,191,894 + 9286 mRNA_918 0.40 1.0
2,191,910 - 9286 mRNA_918 0.41 0.6
2,191,932 + 9286 mRNA_918 0.42 0.5
2,191,962 + 9286 mRNA_918 0.45 -1.7
2,191,992 - 9286 mRNA_918 0.47 -0.4
2,192,034 - 9286 mRNA_918 0.50 -0.9
2,192,059 - 9286 mRNA_918 0.52 -0.0
2,192,243 + 9286 mRNA_918 0.65 -0.5
2,192,540 + 9286 mRNA_918 0.88 0.7
2,193,170 - 9287 mRNA_919 0.11 0.1
2,193,234 + 9287 mRNA_919 0.14 -0.2
2,193,237 - 9287 mRNA_919 0.14 -1.0
2,193,297 + 9287 mRNA_919 0.16 -1.6
2,193,404 - 9287 mRNA_919 0.20 -0.2
2,193,490 + 9287 mRNA_919 0.23 0.7
2,193,644 - 9287 mRNA_919 0.29 -0.3
2,193,746 + 9287 mRNA_919 0.33 -1.3
2,193,829 + 9287 mRNA_919 0.36 -0.2
2,193,905 + 9287 mRNA_919 0.39 0.3
2,194,137 + 9287 mRNA_919 0.48 -0.4
2,194,228 - 9287 mRNA_919 0.51 0.9
2,194,386 - 9287 mRNA_919 0.57 1.0
2,194,656 + 9287 mRNA_919 0.68 0.2
2,194,826 - 9287 mRNA_919 0.74 -0.0
2,194,837 + 9287 mRNA_919 0.74 -0.9
2,194,864 + 9287 mRNA_919 0.76 0.2
2,194,980 + 9287 mRNA_919 0.80 1.5
2,195,082 - 9287 mRNA_919 0.84 1.0
2,195,111 + 9287 mRNA_919 0.85 0.9
2,195,126 - 9287 mRNA_919 0.85 0.6
2,195,269 + 0.7
2,195,281 - 0.4
2,195,448 + -0.2
2,195,550 - -0.1
2,195,571 - -1.1
2,195,578 + 0.6
2,195,594 - 0.7
2,195,594 + -1.5
2,195,599 - -0.6
2,195,603 + -0.3
2,195,606 + -0.4
2,195,607 + 0.1
2,195,622 - 0.2
2,195,629 + -0.2
2,195,637 - -0.5
2,195,643 - -0.8
2,195,673 + 0.3
2,195,717 - -0.2
2,195,719 - 1.9
2,195,724 - 0.4
2,195,724 + 0.4
2,195,742 + -0.5
2,195,757 + -1.1
2,195,762 - 0.0
2,195,763 - 0.4
2,195,782 + 0.3
2,195,858 + 0.8
2,195,899 + 0.4
2,195,944 - -0.1
2,196,042 + -0.1
2,196,049 + 0.9
2,196,055 + -0.9
2,196,058 + -0.9
2,196,069 + 1.2
2,196,073 + -0.0
2,196,178 - -0.2
2,196,215 + -4.0
2,196,336 + 9288 mRNA_920 0.23 -0.2