Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_879

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_879: 9247 - K12412 MCM1 pheromone receptor transcription factor, at 2099747 to 2101589 9247 mRNA_880: 9248 - K10632 BRAP BRCA1-associated protein, at 2101842 to 2104437 9248

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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2,098,747 + 1.0
2,098,754 + 1.1
2,098,759 - -1.8
2,098,759 - -0.0
2,098,759 - -0.1
2,098,759 + 0.1
2,098,761 - -0.1
2,098,762 + 1.3
2,098,762 + -0.5
2,098,763 - 0.5
2,098,766 + -0.9
2,098,769 - 0.3
2,098,769 - 2.0
2,098,776 - 0.5
2,098,778 - -1.3
2,098,782 - -0.4
2,098,784 + -0.3
2,098,793 + -1.2
2,098,801 - -0.2
2,098,802 + -0.3
2,098,803 - -0.7
2,098,805 - -1.0
2,098,809 - 1.0
2,098,811 + -0.6
2,098,813 + -0.4
2,098,818 - -1.5
2,098,819 + -0.2
2,098,822 - 2.1
2,098,822 - -0.2
2,098,824 + -0.4
2,098,824 - -0.1
2,098,824 - 0.0
2,098,828 - 0.2
2,098,830 + 1.2
2,098,831 - -0.9
2,098,831 - -0.8
2,098,832 + 0.2
2,098,833 - 1.4
2,098,854 - -1.3
2,098,859 + -0.4
2,098,862 + 0.2
2,098,899 - -1.0
2,098,900 - 0.1
2,098,903 + 2.5
2,098,904 - -1.0
2,098,908 + 0.5
2,099,023 - -0.9
2,099,028 - 1.3
2,099,030 + -2.1
2,099,035 + 0.3
2,099,041 - 0.2
2,099,042 + 0.9
2,099,042 + 2.2
2,099,042 - -1.4
2,099,045 - -1.4
2,099,048 - -1.5
2,099,049 + -0.9
2,099,055 + 1.0
2,099,059 + -1.4
2,099,064 - 0.0
2,099,064 - 0.9
2,099,067 + 0.1
2,099,070 - -0.2
2,099,089 - -0.2
2,099,114 - -1.0
2,099,116 - 1.8
2,099,127 + -0.3
2,099,129 - -0.5
2,099,146 - 1.0
2,099,156 + -1.3
2,099,159 - 2.5
2,099,165 - -0.2
2,099,169 - 0.4
2,099,171 - 0.2
2,099,171 - -0.3
2,099,177 - 0.1
2,099,178 - -0.2
2,099,189 + -1.3
2,099,193 + -0.0
2,099,207 - 0.3
2,099,218 + 0.4
2,099,219 - -1.4
2,099,220 + 0.8
2,099,222 - 0.9
2,099,225 + -0.3
2,099,235 - -0.3
2,099,237 + -1.1
2,099,243 - -0.7
2,099,244 + 1.7
2,099,247 + -0.1
2,099,249 + 1.0
2,099,294 - -0.3
2,099,305 - 0.9
2,099,308 + -0.3
2,099,309 + -0.3
2,099,314 - 1.2
2,099,332 + -0.4
2,099,332 - 0.4
2,099,351 - -1.5
2,099,356 + -1.2
2,099,365 + -0.4
2,099,380 - 0.1
2,099,380 - -0.7
2,099,382 - 0.7
2,099,384 - 0.4
2,099,385 + -0.1
2,099,387 + 0.1
2,099,389 - -0.0
2,099,392 - -0.1
2,099,392 + 0.1
2,099,396 + -0.2
2,099,398 + -0.2
2,099,404 - -0.1
2,099,405 + -0.1
2,099,413 - -0.6
2,099,417 + -2.4
2,099,418 + -0.1
2,099,420 - 2.2
2,099,425 - 0.5
2,099,426 + -0.1
2,099,428 + 0.5
2,099,432 + 1.3
2,099,435 - -0.6
2,099,440 - 0.1
2,099,441 - -0.4
2,099,441 - -0.3
2,099,446 - -0.6
2,099,449 + 0.6
2,099,461 - 0.5
2,099,466 - 0.1
2,099,472 + 0.6
2,099,484 - 0.8
2,099,486 + 1.7
2,099,487 + 0.2
2,099,488 - 0.2
2,099,489 + 0.3
2,099,520 + -0.3
2,099,532 - 0.0
2,099,545 + -0.2
2,099,555 - 0.2
2,099,563 - -0.5
2,099,565 + 0.9
2,099,566 + 0.4
2,099,566 - 1.0
2,099,571 - 0.4
2,099,574 + -0.3
2,099,575 - 0.9
2,099,575 + 0.2
2,099,576 - -0.7
2,099,580 + -0.5
2,099,582 + 1.5
2,099,584 + 0.7
2,099,587 - 0.2
2,099,598 - 0.3
2,099,599 - 1.1
2,099,600 + 0.6
2,099,603 - -0.3
2,099,612 - 1.1
2,099,613 + 0.3
2,099,620 - -0.5
2,099,621 - 0.8
2,099,622 + -0.7
2,099,637 - -2.1
2,099,640 + 0.8
2,099,640 - 0.4
2,099,646 + 0.9
2,099,672 + 0.0
2,099,689 - -0.2
2,099,692 + -1.2
2,099,741 - -0.8
2,099,766 - -0.9
2,099,872 - -0.6
2,099,919 + -0.6
2,099,949 + 9247 mRNA_879 0.11 0.9
2,100,029 - 9247 mRNA_879 0.15 0.2
2,100,051 + 9247 mRNA_879 0.16 -0.1
2,100,053 + 9247 mRNA_879 0.17 -1.3
2,100,173 + 9247 mRNA_879 0.23 0.7
2,100,219 - 9247 mRNA_879 0.26 -0.7
2,100,266 + 9247 mRNA_879 0.28 0.4
2,100,320 - 9247 mRNA_879 0.31 -0.4
2,100,329 - 9247 mRNA_879 0.32 1.9
2,100,472 - 9247 mRNA_879 0.39 0.7
2,100,486 + 9247 mRNA_879 0.40 0.7
2,100,511 + 9247 mRNA_879 0.41 0.3
2,100,794 + 9247 mRNA_879 0.57 -0.8
2,101,110 - 9247 mRNA_879 0.74 0.5
2,101,167 + 9247 mRNA_879 0.77 -1.3
2,101,226 + 9247 mRNA_879 0.80 -0.3
2,101,234 + 9247 mRNA_879 0.81 0.1
2,101,351 + 9247 mRNA_879 0.87 0.6
2,101,366 + 9247 mRNA_879 0.88 0.8
2,101,502 - -0.3
2,101,798 - 0.4
2,101,902 - -0.1
2,101,914 + -0.1
2,101,938 - -0.5
2,101,938 - 0.2
2,101,938 - 0.1
2,101,964 + -0.6
2,102,073 - 0.6
2,102,079 - -0.0
2,102,085 + 0.3
2,102,228 + 9248 mRNA_880 0.15 0.8