Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_848

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_847: 9215 - HMMPfam-Amino acid permease-PF13520, at 2029732 to 2032618 9215 mRNA_848: 9216 - K17989 SDS, SDH, CHA1 L-serine/L-threonine ammonia-lyase, at 2033096 to 2034366 9216 mRNA_849: 9217 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 2034540 to 2035724 9217

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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2,032,144 - 9215 mRNA_847 0.84 0.1
2,032,246 - 9215 mRNA_847 0.87 0.9
2,032,246 + 9215 mRNA_847 0.87 -1.1
2,032,526 + 1.5
2,032,555 + -0.2
2,032,558 + -0.1
2,032,676 - -0.1
2,032,691 + 1.7
2,032,707 + -0.6
2,032,783 - -0.7
2,032,824 - 0.6
2,032,837 - -0.3
2,032,864 - -0.9
2,033,007 - 0.6
2,033,014 + 0.1
2,033,028 - 1.2
2,033,290 + 9216 mRNA_848 0.15 -0.0
2,034,033 - 9216 mRNA_848 0.74 -0.2
2,034,056 - 9216 mRNA_848 0.76 0.0
2,034,149 + 9216 mRNA_848 0.83 0.1
2,034,251 + -0.1
2,034,340 - 0.3
2,034,486 - -0.9
2,034,486 - -1.6
2,034,491 + 0.1
2,034,637 + 1.6
2,034,754 - 9217 mRNA_849 0.18 -2.7
2,035,339 - 9217 mRNA_849 0.67 -0.3