Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_746

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_745: 9113 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 1780451 to 1782779 9113 mRNA_746: 9114 - KOG0143 Iron/ascorbate family oxidoreductases, at 1783112 to 1784758 9114 mRNA_747: 9115 - K02737 PSMB5 20S proteasome subunit beta 5, at 1784917 to 1786577 9115

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,782,119 + 9113 mRNA_745 0.72 1.5
1,782,273 + 9113 mRNA_745 0.78 -0.2
1,782,551 - 0.9
1,782,555 + -1.3
1,782,559 - 1.1
1,782,568 + 0.4
1,782,578 + -0.3
1,782,579 - 0.1
1,782,580 - 1.2
1,782,585 - 0.3
1,782,592 + -0.1
1,782,680 - 1.9
1,782,864 + -1.7
1,782,865 + -0.3
1,782,866 + 0.0
1,782,871 - 0.1
1,782,877 - -0.3
1,782,885 + -0.7
1,782,887 - 0.1
1,782,893 + 0.6
1,782,917 - -0.2
1,782,948 + -0.2
1,783,188 + 0.1
1,783,191 - 1.1
1,783,197 + 2.5
1,783,305 + 9114 mRNA_746 0.12 -0.4
1,783,314 + 9114 mRNA_746 0.12 -0.7
1,783,317 + 9114 mRNA_746 0.12 0.6
1,783,340 - 9114 mRNA_746 0.14 -0.6
1,783,349 - 9114 mRNA_746 0.14 1.0
1,783,661 - 9114 mRNA_746 0.33 -0.1
1,784,346 + 9114 mRNA_746 0.75 -0.2
1,784,582 + 9114 mRNA_746 0.89 -0.8
1,784,944 - 2.1