Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_707

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_706: 9074 - BLAST Myelin gene regulatory factor [Chaetura pelagica], at 1688032 to 1688891 9074 mRNA_707: 9075 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1689670 to 1691771 9075 mRNA_708: 9076 - HMMPfam-Ferritin-like domain-PF13668, at 1692060 to 1693397 9076

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,688,706 + 9074 mRNA_706 0.78 1.8
1,688,802 - 9074 mRNA_706 0.90 0.2
1,688,981 - 2.0
1,689,101 - -0.8
1,689,109 + -1.1
1,689,131 - 0.3
1,689,145 + 1.7
1,689,283 + 0.5
1,689,408 + -0.6
1,689,558 - -0.3
1,689,584 + 1.4
1,689,602 + -0.6
1,690,740 - 9075 mRNA_707 0.51 -1.5
1,691,004 + 9075 mRNA_707 0.63 -1.2
1,691,113 - 9075 mRNA_707 0.69 -1.9
1,691,121 - 9075 mRNA_707 0.69 -4.0
1,691,491 + 9075 mRNA_707 0.87 -0.3
1,691,503 - 9075 mRNA_707 0.87 -0.9
1,691,504 + 9075 mRNA_707 0.87 -2.0
1,691,772 + -0.3
1,692,019 + 0.3
1,692,040 + -0.2
1,692,200 + 9076 mRNA_708 0.10 0.5
1,692,290 + 9076 mRNA_708 0.17 0.4
1,692,340 + 9076 mRNA_708 0.21 -1.4
1,692,481 + 9076 mRNA_708 0.31 2.3
1,692,484 - 9076 mRNA_708 0.32 -0.2
1,692,517 - 9076 mRNA_708 0.34 -0.6
1,692,726 - 9076 mRNA_708 0.50 1.2
1,692,747 + 9076 mRNA_708 0.51 -1.3
1,692,748 + 9076 mRNA_708 0.51 0.8