Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_698

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_697: 9065 - KOG1389 3-oxoacyl CoA thiolase, at 1665505 to 1667348 9065 mRNA_698: 9066 - K12188 SNF8, EAP30 ESCRT-II complex subunit VPS22, at 1668031 to 1668867 9066 mRNA_699: 9067 - K20289 COG2 conserved oligomeric Golgi complex subunit 2, at 1669102 to 1672155 9067

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,667,066 - 9065 mRNA_697 0.85 1.6
1,667,103 + 9065 mRNA_697 0.87 0.1
1,667,222 - 0.6
1,667,234 + -0.4
1,667,247 - -1.0
1,667,423 - 0.4
1,667,499 - 1.1
1,667,542 - -0.1
1,667,551 - 0.4
1,667,557 - 1.1
1,667,565 + -0.7
1,667,573 + -0.6
1,667,580 + -0.1
1,667,590 - 1.1
1,667,593 + -2.1
1,667,593 + -0.4
1,667,611 + -0.3
1,667,623 - 0.5
1,667,692 + -1.0
1,667,844 - -1.4
1,667,859 + -1.3
1,667,924 - -0.3
1,668,472 - 9066 mRNA_698 0.53 0.4
1,668,731 + 9066 mRNA_698 0.84 -5.0
1,668,740 + 9066 mRNA_698 0.85 -2.5
1,668,908 + 0.1
1,669,057 - -0.5
1,669,063 + 0.0
1,669,201 - 1.5
1,669,637 - 9067 mRNA_699 0.18 2.7
1,669,639 - 9067 mRNA_699 0.18 3.2
1,669,647 + 9067 mRNA_699 0.18 4.3