Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_689

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_688: 9056 - Hypothetical Protein, at 1648310 to 1648900 9056 mRNA_689: 9057 - HMMPfam-Eisosome component PIL1-PF13805, at 1649423 to 1652202 9057 mRNA_690: 9058 - HMMPfam-Tat binding protein 1(TBP-1)-interacting protein (TBPIP)-PF07106, at 1652367 to 1653596 9058

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,648,654 + 9056 mRNA_688 0.58 0.5
1,648,675 + 9056 mRNA_688 0.62 -2.5
1,648,681 + 9056 mRNA_688 0.63 -0.9
1,649,048 + -0.7
1,649,065 - 0.7
1,649,074 - -0.3
1,649,075 - -0.3
1,649,077 - 0.1
1,649,083 + -0.6
1,649,087 - 2.0
1,649,102 + -0.5
1,649,111 - 1.0
1,649,114 + 0.0
1,649,138 - -0.7
1,649,141 + 1.3
1,649,143 + -0.2
1,649,156 + 0.6
1,649,238 + 0.2
1,649,260 - -1.5
1,649,275 + -1.4
1,649,277 + -0.1
1,649,277 + -0.4
1,649,285 - -1.5
1,649,397 - -0.5
1,649,397 + -0.4
1,649,825 + 9057 mRNA_689 0.14 -1.1
1,650,136 + 9057 mRNA_689 0.26 -0.4
1,650,148 + 9057 mRNA_689 0.26 -0.1
1,650,409 - 9057 mRNA_689 0.35 -0.3
1,650,417 + 9057 mRNA_689 0.36 -0.5
1,650,869 + 9057 mRNA_689 0.52 0.1
1,651,008 + 9057 mRNA_689 0.57 -2.0
1,651,469 - 9057 mRNA_689 0.74 -1.2
1,651,598 + 9057 mRNA_689 0.78 2.3
1,652,012 + -0.2
1,652,172 - -0.6
1,652,199 - -0.1
1,652,236 + -1.0
1,652,303 + 0.0
1,652,317 + -0.7
1,652,324 + 1.7
1,652,330 - 2.1
1,652,330 + -0.2
1,652,379 + 0.4
1,652,783 + 9058 mRNA_690 0.34 0.1