Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_667

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_666: 9034 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1607082 to 1608088 9034 mRNA_667: 9035 - Interpro Ribosome associated membrane protein RAMP4, at 1608200 to 1608918 9035 mRNA_668: 9036 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1609196 to 1610811 9036

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,607,636 + 9034 mRNA_666 0.55 -0.3
1,607,775 - 9034 mRNA_666 0.69 -0.2
1,607,926 - 9034 mRNA_666 0.84 1.1
1,608,059 - -0.4
1,608,085 + -0.6
1,608,089 - -0.4
1,608,117 + -0.2
1,608,270 + -0.2
1,608,373 - 9035 mRNA_667 0.24 1.0
1,608,394 - 9035 mRNA_667 0.27 -0.5
1,608,398 - 9035 mRNA_667 0.28 0.2
1,608,402 - 9035 mRNA_667 0.28 -1.1
1,608,412 + 9035 mRNA_667 0.29 0.2
1,608,473 + 9035 mRNA_667 0.38 0.2
1,608,541 - 9035 mRNA_667 0.47 1.3
1,608,545 - 9035 mRNA_667 0.48 -1.1
1,608,557 + 9035 mRNA_667 0.50 -0.7
1,608,694 - 9035 mRNA_667 0.69 -0.6
1,609,010 + -0.3
1,609,051 + -0.9
1,609,132 - 3.2
1,609,144 + -1.2
1,609,162 - 0.9
1,609,179 + -0.4
1,609,288 + -1.6
1,609,321 - -0.1
1,609,381 - 9036 mRNA_668 0.11 0.0
1,609,530 - 9036 mRNA_668 0.21 0.5
1,609,601 + 9036 mRNA_668 0.25 -0.3
1,609,603 - 9036 mRNA_668 0.25 0.6
1,609,739 - 9036 mRNA_668 0.34 -1.1