Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_540

Experiments: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_539: 8907 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 1277629 to 1279340 8907 mRNA_540: 8908 - KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases), at 1279854 to 1286363 8908 mRNA_541: 8909 - HMMPfam-NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)-PF05821, at 1286793 to 1287579 8909

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,278,862 - 8907 mRNA_539 0.72 -2.8
1,278,865 - 8907 mRNA_539 0.72 -3.3
1,279,217 + 0.4
1,279,295 - -2.0
1,279,297 + -3.8
1,279,454 + 0.6
1,279,461 - -0.0
1,279,472 + -0.9
1,279,478 - -1.3
1,279,479 + -2.0
1,279,531 - -2.9
1,279,609 + 0.2
1,279,610 - -0.1
1,279,631 - -0.7
1,279,768 + -1.1
1,279,775 - -1.1
1,279,785 - 0.9
1,279,965 - -1.6
1,280,227 - -1.1
1,280,507 - 8908 mRNA_540 0.10 -0.6
1,280,684 - 8908 mRNA_540 0.13 -1.3
1,280,803 - 8908 mRNA_540 0.15 -2.2
1,280,813 - 8908 mRNA_540 0.15 -0.1
1,281,425 + 8908 mRNA_540 0.24 -2.1
1,281,636 + 8908 mRNA_540 0.27 -2.1
1,281,859 - 8908 mRNA_540 0.31 -1.6
1,282,272 + 8908 mRNA_540 0.37 -1.4
1,282,591 + 8908 mRNA_540 0.42 -1.3
1,282,736 + 8908 mRNA_540 0.44 0.6
1,283,272 - 8908 mRNA_540 0.53 -0.3
1,283,352 - 8908 mRNA_540 0.54 -1.7
1,283,617 + 8908 mRNA_540 0.58 -2.5
1,283,618 - 8908 mRNA_540 0.58 -1.0
1,283,710 + 8908 mRNA_540 0.59 -2.0
1,284,079 + 8908 mRNA_540 0.65 -0.9
1,284,213 - 8908 mRNA_540 0.67 -1.7
1,284,722 + 8908 mRNA_540 0.75 -1.1
1,285,025 + 8908 mRNA_540 0.79 -0.4
1,285,113 - 8908 mRNA_540 0.81 -0.3
1,285,113 - 8908 mRNA_540 0.81 -0.4
1,285,545 - 8908 mRNA_540 0.87 -0.7
1,286,112 - -0.9
1,286,557 - -1.0
1,286,842 - -0.7